Array 1 409872-411777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBS010000001.1 Carboxydothermus ferrireducens DSM 11255 Ga0395992_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 409872 30 100.0 39 .............................. TGCTAAATGGCAGTTCTTACCCTTCTACCGTTAATAATT 409941 30 100.0 36 .............................. GGGGAATTTAGGGGAAGGTAAAACTTTTGGTATGAC 410007 30 100.0 39 .............................. ACGAAATTGAAAAATACTGGGGAGTTACAACAGGAGCTA 410076 30 100.0 36 .............................. TATATTTGGATGCTTGGTATAACAGAAGTTATTTTG 410142 30 100.0 35 .............................. GTGTTCGCAAGCTGAATAATCGAACCAGCCGGGCA 410207 30 100.0 37 .............................. AAAAAATCGGCTAACTTAAAAAGCATTTCGCCGCTTA 410274 30 100.0 36 .............................. ATATTATTTTTTATATTATTTTGGATTGGATTCGGA 410340 30 100.0 38 .............................. GCTGATGTCTTTAATTCAGCTTGGCTCAACGCAGAAAT 410408 30 100.0 36 .............................. CAACAGGCCCGACTAAGGGCGCCACCGGCCCTACCA 410474 30 100.0 37 .............................. ATTGGCTGGGTGAGCAAGAACAACATCAACGTCGAGG 410541 30 100.0 36 .............................. AAGATTGTTTGCGTGAGCTTGAAGATACAGTTAAAA 410607 30 100.0 37 .............................. AGCGTAATAGGTTGCAGCTGTTATGACTGTGTTTGTT 410674 30 100.0 37 .............................. CTTGGAAGAGTCGAAAGATGTAAAATCATCCTGTAAG 410741 30 100.0 37 .............................. TCAAGGTCAGTATAGCAAAACTCAATAAAAAAATAAA 410808 30 100.0 38 .............................. AAAAGCGAGAAAAAATTAATAGAAATGGCATGGGAAGA 410876 30 100.0 39 .............................. CTTGCATTTCCTAAAATAGCTGTTAATACAGAGGAAGTA 410945 30 100.0 37 .............................. ATTAAAGGGGGTGAATAAATGAAAGAAATGTTTGTGG 411012 30 100.0 35 .............................. AAACTTTCGGCAATTTCTTTTGTTCTATCGTTGCA 411077 30 100.0 37 .............................. GAAGAAATATTAGATACCGATACAATCAATTTAATAA 411144 30 100.0 36 .............................. ATATATTCTTTAGTTACTGGATGATAATTATAAACT 411210 30 100.0 35 .............................. ACTGGAAGATATTATTTATCTCCAACATCAGCAAT 411275 30 100.0 37 .............................. TACTACCGGGAACCACACAAGCGGAGTTTGGGCCTCA 411342 30 100.0 39 .............................. TCTTCTTTTGCTTTCTGGGATAATAGAAGATATGGTAAA 411411 30 100.0 37 .............................. TGCGAGAATTATGGCGTCACTAACGTAGGCGTTAGGA 411478 30 100.0 40 .............................. TCTCGGCAAGCCACTTGCCTAATTGGCTTACCGCATCCAC 411548 30 100.0 37 .............................. CAGGGAACACCGGTTGCCACGATAACGCTTGCCGTGA 411615 30 100.0 37 .............................. AAACAATGGGAAGGTTGGGGGACAGCGTTAAAACCAG 411682 30 100.0 36 .............................. GTTTAATCTTATGCCAGAATTCGTAGAGTTCTGGGT 411748 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 29 30 100.0 37 GTTTAGGTAGAACCATTGTGGGTTATAAAC # Left flank : AAGTATACAGCAGTTATGATTATGAAGTGTTTTTAGATCCGAGGATATATAACTATTTAAATGAATTGCTTACCGAAAAATATGATAATAAAGACTTAAGAAAACAGTTTTATGAAGAGTTTGACGGTATAACGGTATATCCTTTTGTTTTCAAGGATAAAGTGGTAGAATTAATAGACAGCAAGGATTTTTATGAGTTGGAACTTTATAAAATTTCGTTGAAGCTGGGAACTGTACAGGGATTAATGAAAAAAGGATTAATAGAACAGGAAAAAATAAATGGTATTCCGATAAATTTTGTAAAGTGCTATTATGACAGTGAAATTGGTCTGGACAAAAACAGACCACTGGAAATCAAAAAAGTAATAGAAAAAGATTTTATGTAGCACATATACATTGTGAATCGTCTCACAACAGGGATTTTTACACTATCGGAGGTCGACGACGATTTTGAGGTTTTCGTATCCTGAAAGCCTTATTTTTTAAGGCTTTCAGGATGG # Right flank : CGACGAACTGTTACCGCTCACACTAATTGACCACATTTAGCTCAAATTAAGTGGCCGCAAATATTGCTCACTTTATTTGGCCAGGCAGTTTTTTATACTGCCTGGCCATTGGCATAATTTTATACAGAAAATTCATTTTCAATTACTACCTTGACCATACGGTCATCAATAAGCCGTTTCTGTTCGGCTGCAGCTGCCATTAGACAAGCAATGCACAGGTTATTGATTTTCCGGGCAATGCCACCAGCATACTCATAGACCATATCCAAGGCATCATCGGTAAAAATTGCTGAACTTGCCCCGGCTGTCCTGAGATGGTGGGCCACATAGCCTTTTGCTTCCTCCCGTTCCATGGGCGGAAGGTGGTAGCGTAGATTTATCCTCTGAGCAATAGCTTCATAAACCTGAAGTTGTAAGATACGACGCAGTTCTGGCTGACCTACCAGAATTAGACTCATTGGATTATATGAATCCATGCGAAAATTCAAAAGAAAGCGTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 414922-417222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBS010000001.1 Carboxydothermus ferrireducens DSM 11255 Ga0395992_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 414922 30 100.0 38 .............................. ATAGATTCTATCGAAGAGGACTCGACTAATACTGCCCA 414990 30 100.0 36 .............................. GTGAATATAAAGTGCGGTAGTAGGGGATAAGCCATG 415056 30 100.0 38 .............................. GCCGGCATGGCAACCACCTCCCGTTCGCCTGTTCGTGT 415124 30 100.0 36 .............................. AAAGCAGTCCAAACTTTACTCCGACTGCTGGATGAA 415190 30 100.0 37 .............................. GCGTATCAGCAGGATTGTCCCATTCTTTAGTAATTGA 415257 30 100.0 35 .............................. TTCTTTATCCCATCAATTAGTTCGCCACCGTATAG 415322 30 100.0 36 .............................. GGGGATAATAGAGAGATTAGGCAAAAGGTTAAGCCA 415388 30 100.0 36 .............................. AATTTAAATCAAACAAAAATTACTAAGATGCCACTT 415454 30 100.0 36 .............................. GTGGTCCAATTGCGATGAATTGAAAATACTCCCGTC 415520 30 100.0 37 .............................. GTAATCTCTGTGCTTCAGTTAATCCTGCCATGTGCGT 415587 30 100.0 35 .............................. TTCTGAAAGCCTGTGCTGTCAAGGTTTACTACCAC 415652 30 100.0 36 .............................. CGGAAGAAAACGGCAGAAGCTGAAAAGCCGAGCTAT 415718 30 100.0 37 .............................. CAGTGGAAAAGCGCTGGGGGCCGGAGACGGCACCCCG 415785 30 100.0 37 .............................. GCCTCGTCAGCGCCGGGAGGCCATCCCCGACGGACGC 415852 30 100.0 36 .............................. TCAAAAAAGGGAAGCAAAGCAGGGTTAAATTTTCCC 415918 30 100.0 37 .............................. GATGAAGGATGTCGAATTCTTGGCCTGGCTGACCGAA 415985 30 100.0 39 .............................. GAAGCTCCAGAACCCTGAGATTTCCGGTATAGAGTATCA 416054 30 100.0 37 .............................. TATATAGCCGTTAATGCAAACCGGTACAACCTCATCT 416121 30 100.0 38 .............................. CCGGATTTTCTCGGCAAGCTGCTTGTAGTTAACCCGGA 416189 30 100.0 37 .............................. GCGTGGTATCTCGGGCGACATCCGGAACGGGAGGTCA 416256 30 100.0 36 .............................. GCTCATTTTTGCGAAAGGAGGCAATCACCATGCACA 416322 30 100.0 37 .............................. GCAAACAAGTGGTACAAAATCAACAAAGTATAGGAAA 416389 30 100.0 37 .............................. CTGACGCCGCCGGTCAGCAAATGGAAGGTGCTGAAAT 416456 30 100.0 35 .............................. CCAGTAAAAGCAGTAGTAGTAGGTGGTCATCCTCG 416521 30 100.0 36 .............................. AAAGAAATAAAAGAAAAAATTCAAATGCATTTTAAG 416587 30 100.0 38 .............................. CCAAAAGCGCCATGATGAATTTACGGCTTTTGAGCTTC 416655 30 100.0 36 .............................. TCACGTTTTTTCACTCAATTTCCCGCAGTGTTGGTT 416721 30 100.0 38 .............................. TAAAAATTTACTGCTGCTATAGCTTCCTGTATAGCTTT 416789 30 100.0 35 .............................. TAAGGGACGTGTTCTAATTTACCAGAGTAAACCAA 416854 30 100.0 36 .............................. CAAGCCTGGGATAAAAAAACCAGTTTTTTGCTAATA 416920 30 100.0 39 .............................. ACTGACAATATTATTTTTTCTTATATACGGTCCGTTTGC 416989 30 100.0 37 .............................. TTTTTAACTCTTGCTAATCTTAGATTTATTCTCATAT 417056 30 100.0 38 .............................. ACATTTGAGGAATTAGACATGGATTATTACAATGAATT 417124 30 100.0 39 .............................. AATTGTTGCATATGCATACTTAGTACGGACAGGGAAATA 417193 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 100.0 37 GTTTAGGTAGAACCATTGTGGGTTATAAAC # Left flank : TTCAACTACAGCTGCAATCAAAACCTGGGAATAATGGCGGTAAGGCGCAACAAAATCCGGTAAAATGGCATGGGTTTTCCGGCAGTTAGGACAGCGATAGCGGGCTATTGGAATTCTAGTAGTAGTTCCATCTAAGGTTATTATTTTTCGTCGATACCACCCGTGAAAAGACATCTTTGCACTACAAACCGGGCAATACCATTGGTTTTCTTCCAAAAAATTTAAGTAATTTTCTAAATACTCCTTTACTGAAGCTCCAAGATAAGTTACAATCAAAGTACGGTATGGAGGAAAGTCTTCGGTAAGGGGAGTGTCAGCTCCGTAAACCTTACTCGAAGACTTTTCCTTTTTCTCCTTCTTTAGATTTTTTCTCCAATTATTCGCCATTATCTAAACAAATTCCTTTTCTATTTGGCCACGAAATCTGAGCATTGGACGGTTATTTTATGTGAGTAGAAACAACGCGAACGATTTTCATCTGTAGAAAGAGAGTGTGATAT # Right flank : CCAAGATAATATTGTTATTTAGCAAATTATCTTCTCCAAAACCCTCGGAAATTTTTCAAAATAAAACAGCGGTTTAGCCTTTTTAGACCCCAAATATTTTGCTATAATTTTTGCAAAATATTTGGGGTGATTTATTTTGATGATTTTTTATGATTTTGGCTTATCTGTCCGGGAATATGCCCGGCGGGGCAAAAAGAATGATTTTCCCGATGTTGACATTTGCCCGCATTGTAAAGGGCATATTAGACTGTTACGGCATGGATTCTATAATAGAAATGCCATTACTAATAATAATTTTTTCCATCCCTATTTGCCGCTTGAAATGTCCTTCCTGTGGTAAAACCGTCTCAATAATCCCTTCTTTCTTACTTCCGTATTTTCAGCATACTGTGGCTACTATTTTGATAAAACTTAAGAATTATTTCCTTTATCGAAAAGTCATGGGTTATCGCCAGTTATTGGAGTTTTTTAGTCGAAGATTTAGGAAAAATCTAACCCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 420011-420575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBS010000001.1 Carboxydothermus ferrireducens DSM 11255 Ga0395992_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 420011 30 100.0 37 .............................. TTGCTAATACCAATAAGCAAAAATACAGTCGGGTTTT 420078 30 100.0 37 .............................. CTTGCCCAGTATGATATGGGCGAGTGGGATAATGAAG 420145 30 100.0 37 .............................. GCTTTTGTGGTTCTTGTTTCTGTTGTTCTGGCTTCGG 420212 30 100.0 37 .............................. TGATCCAAAAAGTGGCGGAAGTAGCGGCATTAAGAAG 420279 30 100.0 37 .............................. CGTGGATACCGTCCAGCAGAGAACGGGTTCTTCGCCT 420346 30 100.0 36 .............................. GTTTTCCTGCTTCTTGCTTTTCTTCTTTTTCGGTTG 420412 30 100.0 37 .............................. GCCTAACAACTGCGGTTTTGGGATTGTTAAAAGAACA 420479 30 100.0 37 .............................. AATCTTTAGCAACTGTTCGTAAGAAAAGCTGTCGGGC 420546 30 83.3 0 ......................AGT...GT | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.1 37 GTTTAGGTAGAACCATTGTGGGTTATAAAC # Left flank : TAAACCAGAATAGGCCTCTTGCCCAAAGAATCGCCATGAGTTATAAAGTTGAGCCTTTACCCAGGGAAGAGGTAGCAAGCTACATCCAGCATCATATGAAGCTTGCTGGAGCTAACCATAATATTTTTTCCGAGCCTGCCATCGAAGCTATTGCCTCTTTATCCCGAGGCTGGCCCCGGCTTATCAATAAACTCGCCACTCATTGCTTGCTGTATGGGTTCCAGGCTAAAAAAGAAATCATTGATGCTGAGGTGGTTAGGTTAGCTGCTCAGGATACTGGTTTCTGATCTTGCCCGGTCGCACTTTTGCGGCCGGTTTTCTTTTTATTTTTCTTTGCTGAAACACCGTGATATTTTGCAAAAATTGTTAATGGCCTACTAAAATAATTTGCAATTTTTGCTGATTCTAGCTGCCTTCTATGCTAATTTATTTTGAAAAATCGGTGCCTAAATAATTTGCAAGTTCACAATAATATCAAAAGCATTCAATATCTACACAAA # Right flank : TCCATATAATTGTGTAAAAAGGGGAATTTAAAAAAGGTTGAGCCATTCCCACCCTCTGGTTAGAATTAAAGGTGACCAAACCAAAAACCTAACTGGAGGGATGAGAAATGGCTCAATATAATATTACCATTGATTCCGAAATTTTGCATCACCTCTTTCTCAATGGAGCAAAAGATGAAGGAGTAGCTAAACTTTTAGAATCCGTGCTTAATCAAATACTCCAAGCCCAGGCCAAAGAGCAAATCAAAGCTGACCCTTACGAAAGAACTGACGAAAGACAAGATTATCGCAATGGCTATTATCCAAGAAATTTAGTTACCCGTGTAGGTACGCTTACCTTAAGAGTTCCAAGACTTAGAGAAGGTAAATTTACTACTGATATCTTTCGCCGTTACCAGAGAAGCGAACAGGCACTTTTACTGGCATTAATGGAAATGGTGGTTAATGGCGTATCTACCAGAAAAATTGAAGAGATAACTTATGAACTTTGCGGTACAGAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 520457-523038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBS010000002.1 Carboxydothermus ferrireducens DSM 11255 Ga0395992_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 520457 30 100.0 40 .............................. ATACAAAAAGATCAGCCAATACCAAGAGACCCAGTAACAA 520527 30 100.0 37 .............................. TATTAAAAACGTTTTTTATGGCCTTAAAACTGTTTTA 520594 30 100.0 36 .............................. AGGGGCAAGAGGAGGGTAAGCGGTTTTTGTTTTAAA 520660 30 100.0 37 .............................. TCAAAAATAAACCACGAAACTGTTGTTGAAGCCTTAA 520727 30 100.0 38 .............................. GATTTTTATAAACCGGGAGCCATGTATTTTGTACCTTG 520795 30 100.0 37 .............................. CGGCCTGTTTTAAAACTGCTGGCGACCATGGCAAATT 520862 30 100.0 36 .............................. GGTGGAAAGTTGCACGCTGGTCGGCTCACCCACAAC 520928 30 100.0 37 .............................. GCTATCAGCGGCATTCAGTCCGTGATTTACTACGACG 520995 30 100.0 38 .............................. CCTTAAAACGGCCAGTCTCCTTTTGGTACCGGAAACCT 521063 30 100.0 36 .............................. CAATCGTTACTTTGAATGTTTTGCCCGTCAACAATA 521129 30 100.0 35 .............................. GTTAAAAATGTAAAAAGCTGGCAAAAAGCCAGCGC 521194 30 100.0 38 .............................. TTTTTGCACTTTTCGAGATTCTATAAAACCCCAGCCCT 521262 30 100.0 37 .............................. ACATTTCAATTAGCAAAGACTTAGCTGAAGAAATTAA 521329 30 100.0 37 .............................. TTTTTGATGTAGTCAAGCATGAGCTGTCTGAATAGAG 521396 30 100.0 36 .............................. AGCCTCGTTAAATCTTGCTCTGTGAAGGGTGTTAAT 521462 30 100.0 39 .............................. TCGGTAACAAAATTTAATGAGAAAGGAGGTCTTATTTGA 521531 30 100.0 38 .............................. GCGGGAGCAAACAAAAAAGAGTAGAACCAATCTATTTT 521599 30 100.0 36 .............................. CTTAACGCGCAGGGTTGTAGTTTCTTTACTGCCACC 521665 30 100.0 37 .............................. ATGCAATGCGCTAAAGAATTACCTGCCCGCAGATGGA 521732 30 100.0 38 .............................. AAAGGAGGTAAGAATATGAGATTGGCAGGAAAAATCAA 521800 30 100.0 35 .............................. TCCAAACAACCGCTTGCCAGTAACATTGCTAAATG 521865 30 100.0 37 .............................. TTAAAAACCATAGTTCTAACGAACAAGCTCCCTTAGT 521932 30 100.0 42 .............................. CGGGATCCTGTTACTAAAGATGACCCTATACCTAGGGATCCG 522004 30 100.0 36 .............................. CTCCATCATCTTTGGATAGTCCCGGGCCAGCGTTTG 522070 30 100.0 36 .............................. TTGCTCATCGTTTTCGCATTTCCAGCCAAACCATTG 522136 30 100.0 36 .............................. ATTACCGGATTAATGTAAGTATTTATAATTTGCTGA 522202 30 100.0 36 .............................. ATTACCGGATTAATGTAAGTATTTATAATTTGCTGA 522268 30 100.0 36 .............................. CTCCATCATCTTTGGATAGTCCCGCGCCAGCGTTTG 522334 30 96.7 37 .............................T CTCAGCAGGGCAACACAGGTGGGGATTGTACCTCACA 522401 30 96.7 36 .............................T TGCGATGAGATAGCGACTATCATCTACCACATCGCT 522467 30 96.7 38 .............................T TATTATGCTGCTTATATAACTCCGGTTGTAATATCTAC 522535 30 96.7 38 .............................T TATTATGCTGCTTATATAACTCCGGTTGTAATATCTAC 522603 30 96.7 37 .............................T ATTCTGTTTAGTCCTGCCGTCAGGTTAGCCATAATTT 522670 30 100.0 38 .............................. AATAGAGCTTTTGCGGAAATTCCTAAAATAAAAGTACC 522738 30 100.0 36 .............................. GGGTGATAAGCGGTATCACTGCAAAGCCAGAAATTG 522804 30 100.0 38 .............................. GCGATATGTATTTTTCACCAGCGATATTATGTCCGTGA 522872 30 100.0 38 .............................. CTGGTACAGGACTGTTCGGGAAAATGATAATTTTATAC 522940 30 100.0 39 .............................. CACAGGGTTTACCGCACCAGTCGGAGTGTACCATTTTAG 523009 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 39 30 99.6 37 GTTTTAATAGAACCATTCTGGGGTGGAAAC # Left flank : AATAAAATTAGAAGCCTATCGATTGATAAAACATTTAATTGGGGATGAAAACTACCGGGGATTCAGGGCGTGGTGGTAAGATGTATGTTATTATCGTTTACGATATTGGGGAAAAAAGAGTAGCCAAGGTGTGTAAGTTTTTAAGAAAATACCTAAACTGGGTGCAAAATTCTGTGTTTGAAGGGAACTTAACCGAAAGTCAGTTTGAAAAAGTAAAATATGGGCTAAAAAAATTAATTTGTGAAGAGGAAGATGCAGTGCTGTACTACGTTTTTTCAACTCCCAAGTGGGTGGAAAGGGGAATTTTAGGTAAGGAGAAAAATCCGATAAGTGATTTTTTGTAAAAAAGAGCAGGAAAATTCGGAATAAAAGCGAATAAAAAGTGGCAAAGGAATAAAAAAGTCGTCGCTGCCCGGAGTTTTTTGCACTATCGGAGGTCGACGACGATTTTAAGGTTTTCACCTCCCTGAAAGCCTTATTTTTTAAGGCTTTCAGGATGG # Right flank : CCTACAGCTTTAGCCGTATTTGCCCAGAATGGTGTGAATTTGCAAATTATTTAGGCACCGATTTTTCAAAATAAATTAGCATAGAAGGCAGCTGTAATCTGTAAAAATTGCAAATTATTTTAGTAGGTCAGTATAGACTTTTGCAAAATATCACGGTATTTCAGCAAAGAAAAATAAAAAGAAAACCGGCCGCAAAAGTGCGACCGGGCAAGATCAGAAACCAGTATCCTGAGCAGCTAACCTAACCACCTCAGCATCAATGATTTCCTTTTTAGCCTGGAACCCATAAAGCAAGCAATGAGTAGCAAGCTTATTGATTAGCCGGGGCCAACCCCGGGATAAAGAGGCAATAGCTTCGATGGCAGGCTCGGAAAAAATATTATGGTTAGCTCCTGCAAGCTCCATATGATGCTGGATGTAGCCTGCTACCTCTTCCCTGGTTAAAGGCTCAACCTTATAACTCATGGCAATCCTTTGGGCAAGAGGCCTATTCTGATTTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGAACCATTCTGGGGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 811021-812644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBS010000002.1 Carboxydothermus ferrireducens DSM 11255 Ga0395992_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 811021 30 100.0 36 .............................. TGATGCAAAATGATATACTTCACCTGCTCAGCCGGT 811087 30 100.0 36 .............................. GGGGGCATAACAAATACCGGCGGGCAAGAGGAGGAG 811153 30 100.0 38 .............................. CTGGTTTAACAGTCTTTATAGCTTTTAAAAAGGCCTGC 811221 30 100.0 38 .............................. CAGATTTAAACATATGTTCACCTCCTTTCCGAGAAGAT 811289 30 100.0 35 .............................. AACTAAGTGCCCCGGTGGCGGTATTAATGCCGTGG 811354 30 100.0 36 .............................. TAAAAATATAGCTAAAAGCCTTGGCGCTGTAGGATT 811420 30 100.0 37 .............................. ATCGCCTCCCTTATTGTTTGTCTTTATCTTATCATAC 811487 30 100.0 37 .............................. TAGTAATATGTCTAACATTAATAACGCCATCAATCCC 811554 30 100.0 36 .............................. TGGCGAAGTGTGGCTCCCGGCAGTGGTAACACACTG 811620 30 100.0 35 .............................. GAGCAGCATAACATCAAGATCCGGAGTATGACAGA 811685 30 100.0 35 .............................. AGTGCAGACCAGTACACAACTGCGTTATGGCATTT 811750 30 100.0 37 .............................. CATAATGCGGCTCCCGGCAGTGATAGCAGGTCGCCTT 811817 30 100.0 36 .............................. AGTTTTGCGATAATTTAGTAAATAAAAGATGTTCGG 811883 30 100.0 37 .............................. GCTCACAATTTGGATTGGTACAGTAATTTCCATCAAG 811950 30 100.0 36 .............................. GGTTAAAATCTTTTCAAGCTGCTCAAAGTTCGACAG 812016 30 100.0 37 .............................. TAGGTGGGGTTAACTACCATGTTCCTTACCCGCGCTG 812083 30 100.0 36 .............................. ATGTTCACAGGACGGTAAACCGCTTAATAGACATAA 812149 30 100.0 36 .............................. TTGATGCAGTTGCTCAACTTGCTCAATGGTTAGCTA 812215 30 100.0 36 .............................. TCCATTTTTTTCCAGTTCCTTCCATAAGCTAATAAT 812281 30 100.0 37 .............................. TAAAATTTAAAAGCCCGCCAGAATAAAAAACTGGCGG 812348 30 100.0 36 .............................. TGCATCAAACAATCCTTCTACCCCTCTCCACACCTG 812414 30 100.0 39 .............................. GGGCGTGCTCCCCGCAAGCAAGATGCCCACGGCGGCGCA 812483 30 100.0 36 .............................. GGATAACTGGGAGGTGTATAAAGTTCTTACGCTTTA 812549 30 100.0 36 .............................. TGCAAAACGAATGGCTACCAGACTCCGGGGTCGGTG 812615 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 100.0 36 GTTTTAATCGAACCAATCTGGGATTGAAAC # Left flank : GGAGCTTATTATGCCATGAATCTTGATGGGGGAGCTTCCAGTGGCCTTTATGTAAACGGCAAGTACCTAACCAAACCCTGGAGGCTTTTGTCAAATGCACTGGTGATTTCGTTGAATTAAGATTAATCAATTAAAATTATTTTTTTGGGAAAAGAGGTAAGAGTAAGAAGTTTTAATCATGCCATTTATGTGAAATGCTGAACATCTCTTTAAGAGGTCGACGAAAAGATTGCATAAACCATGAATGAGGAACATAATTTAACCGGAGTTTACCGATAAAAAATGAATATATTTGCAATCGAAGTAAATATTATACCATGTTTTTCGTCGACCTGCGGTTACCCCAAAAATCCCGGGAGGTCGACGAAAGAATGAAAATAGCCTTTAAACTTTGAAAAATAAGTGTTCAGTGGAAATTTACCACTATGCACCAAAAGTTACATAAAAAATGTAAACTTCTTCTTTCTTTAAAAATCTTTTTCTTTTATAATTAATTATGG # Right flank : TAAAGTTTTTGGCGCCCCTGTAATACTGCCGAAAAGTTTTAATCGAACCAATCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCAATCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //