Array 1 272-71 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDI01000018.1 Parabacteroides sp. AF48-14 AF48-14.Scaf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 271 47 100.0 30 ............................................... TATAATATTGAATAGCTTCATCAGAAAATG 194 47 100.0 30 ............................................... GCCAATAAAGAAAGTTAATCTCATGAAAAT 117 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTTTTCAGTATGTCAAAGATAATAGATTGAAAGCAAATCACAAC # Left flank : TCATTATACAAATGTTTTAGTGGTGAACTTCGCCACATAGCATATCCGGAAATGTAATATGAATAGATTTAGTGAATATCGTATTATGTGGGTTCTTGTATTTTTTGATCTTCCGACAGACACAAAAAAAGAAAAGAAAGCCTATGCTGATTTCCGAAAGAATTTGCAGAAGGACGGTTTTACTATGTTCCAATTCTCCATCTACGTTCGTCATTGTGCAAGCGCAGAAAATGCAGATGTACACATAAAAAGAGTTAAATCCTTTCTTCCCCCCAATGGTCAAGTCGGTATTCTATGCATAACAGATAAGCAATTTGGCAACATAGAACTATTCTTCGGTAAAAAAGAGCAACCAATAAACACTCCAGGCCAGCAACTTGAACTTTTTTAAAATAAGAAATCCTGCCTTGCAAGCAGGATTTCTTACTGAACAACAACTACTTTTTTATTTTCTAATTGCAAACATTAAGTACTGAGCCACAATTAATTGCACACAATCA # Right flank : CGGAAGAAACTCGAATTCCCATTCGATTGAATAGTTGTTTTCAGTATGTTCAAAGATAATAGATTGAAAGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTCAGTATGTCAAAGATAATAGATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 8-714 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDI01000105.1 Parabacteroides sp. AF48-14 AF48-14.Scaf105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 8 47 97.9 0 ..............................................T - Deletion [55] 55 47 100.0 29 ............................................... GCATTCTAAAAGTATCTGCTAAAGACATT 131 47 100.0 30 ............................................... GCTGTCTCGAGAGCATCAACTGCGGCAATA 208 47 100.0 29 ............................................... CTGCAATCATATCCTTTAATTCTGATACG 284 47 100.0 29 ............................................... CATCCTTCATCAGACTATCAGCCATCCGA 360 47 100.0 30 ............................................... ACAATTTCGCAACGGTCTCGTTGTCGATAT 437 47 100.0 31 ............................................... AAAAGGGGGGCAAAGTTCCAGAAGAACGAAA 515 47 100.0 29 ............................................... TCGCTTCTAATACTTCTAAATCTCGATTC 591 47 100.0 30 ............................................... CGTCGATTTGAGCCAATTCAGCTTCCGACG 668 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 10 47 99.8 26 GTTGTTTTCAGTATGTCAAAGATAATAGATTGAAAGCAAATCACAAC # Left flank : TTGAAATG # Right flank : ATATGGAAGCTGTTATACCGGGGACGGGAGTTGTTTTCAGTATGTCAAAGAT # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTCAGTATGTCAAAGATAATAGATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 14-597 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDI01000107.1 Parabacteroides sp. AF48-14 AF48-14.Scaf107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 14 47 100.0 30 ............................................... ATAAAACAATTCGTGATATTTGCCGAAAGG 91 47 100.0 30 ............................................... TTATTCTCGACAATAATCGCGCCCACAATC 168 47 100.0 30 ............................................... CGATCTCTCCAGTGTTATACATTTCTTCAG 245 47 100.0 29 ............................................... AGCTGCATCCAGCTCTTCATTTCCACCAG 321 47 100.0 30 ............................................... GTGTGACCGGGACAGGTACTAAGATCGGCT 398 47 100.0 30 ............................................... GGTTACGTACGGTGACCCTACACAATCAGA 475 47 100.0 29 ............................................... CAGTCGAACCATTGTCACGGCCAGGCAAT 551 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 100.0 30 GTTGTTTTCAGTATGTCAAAGATAATAGATTGAAAGCAAATCACAAC # Left flank : TCTGCCTTTTCGTG # Right flank : TTGACAACAGCTGTAACCAAACGTTTCACTGTTGTTTTCAGTATGTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTCAGTATGTCAAAGATAATAGATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //