Array 1 251928-254114 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHP01000003.1 Clostridium sp. 1001175st1 A10 strain 1001175st1_A10 NODE_3_length_533533_cov_27.3908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 251928 33 100.0 33 ................................. AGAAATTACAGATCGCACGCTAAATAAAATGGC 251994 33 100.0 34 ................................. TGGCAAATGATGAAAAGAAAAAAGGGAATATAGA 252061 33 100.0 34 ................................. ACCCTGGGAGTGGACACGGGCAAATCACTGTTAT 252128 33 100.0 35 ................................. ATATAGATATTAGCAAACATTTGCGATGTCAGGTT 252196 33 100.0 35 ................................. GACTGGTTCTAGTGTACGCACATACTGGCGGGATA 252264 33 100.0 34 ................................. AGATATTACCGGATATTACTATCAGCCACCGAAT 252331 33 100.0 34 ................................. TCCTTGCCCGGATTACCCGCAGGACATTATCAGC 252398 33 100.0 35 ................................. AAAGAAGACGTAAAGATCGAGAATGAACCGACAAA 252466 33 100.0 34 ................................. GCTCGGCCTCGAGGACTACGGGGACAGCGACAAC 252533 33 100.0 35 ................................. TCAATACCGAACTTCTTTCCTGCATCTGAGAGAAT 252601 33 100.0 34 ................................. GCTTCCGCTTTGGCAGCTGCTTCAAAATTCTTAT 252668 33 100.0 33 ................................. CTCCTTCTTTAGTTCCTGCCCCACTTTTTCCGC 252734 33 100.0 35 ................................. AGCCTTATCCTATGACTTAGGAGCTAACGCTCCTA 252802 33 100.0 34 ................................. AAATTGAGCCTCATTATGAACATGATTGACAACC 252869 33 100.0 33 ................................. TCTTTACTCTCCTTTTTTGTCAAAAAAATAAAG 252935 33 100.0 35 ................................. CTATCTGGCTGTTTTTTTGTAAAAGAAAAACACCT 253003 33 100.0 34 ................................. GTCCAGATATACAAGCGGGACTTTTACCATAACG 253070 33 100.0 34 ................................. TACGATATCGTCCGTTTGCAGCCTCGGCAGTTTG 253137 33 100.0 35 ................................. ATGTCATATATACAATTACACATTCCGTTCCTCCT 253205 33 100.0 34 ................................. AGAATAGGCTTAAGGAAAAGACAAGGGAGGGCGG 253272 33 100.0 35 ................................. TCCCGGCTGTGCCAACACGCCCCCTCAACCGGTGT 253340 33 100.0 34 ................................. TCACATTCACAGCACGGAATCCGCTCCCGAAACT 253407 33 100.0 35 ................................. ACAACGATGAGTACGCTTATGATCGAGAAGACGCA 253475 33 100.0 35 ................................. GGATATACGCACGCCGGTACGATGCAGGAAATCTA 253543 33 100.0 36 ................................. ATTTACTGCTATACCTAACTGATTTGAGAGGTCCAT 253612 33 97.0 34 .............C................... TGCTATGACGTCAGGCCATAAGCAGGGATTGGCT 253679 33 97.0 33 .............C................... CATTGTACGTTCTCGCTGCCTTCTCCGCGGTTT 253745 33 100.0 34 ................................. TATTCCTGCTTATCGCCCTGACCATAATCTGTAC 253812 33 100.0 34 ................................. AATCCGGTTGCTCTGTCATGAACTTCCACACCGT 253879 33 100.0 34 ................................. GCCCCCGTCGCCGTTATCTCCAGCGTCTGCGGAT 253946 33 100.0 33 ................................. CACTGTGTCATTATATGCATGACAATACACCGG 254012 33 97.0 35 .........................G....... CTTGCCACGGGCTGCCGAGTCAGCAAGGTGGTTAA 254080 33 84.8 0 ................A.A.....A..C..T.. | T,T [254104,254111] ========== ====== ====== ====== ================================= ==================================== ================== 33 33 99.3 34 GTCTCCGCTAGCGATAGCGGAGTGGATTGAAAT # Left flank : TCCGCCATTTTTCTGGAAGTAGGAGGCGTTTCTCTATGCTGGTACTGATTACTTATGATGTGAATACCGAGACCGCTGCGGGAAAGACGAGATTGCGTAAGGTCGCAAAGCAATGCGTAAACTATGGTACCAGAGTGCAAAATTCGGTATTTGAATGTATTGTGGATAACGCTCAGTGTGTGATGTTAAAAGCGGCGTTGAAGGACCTGATTGATGTCAGTGTTGACAGTTTGAGGTTTTATTATCTTGGCAACAAACATGATACGAAGGTGGAACATTTTGGTGTCGAGAAAGGGGTAAATGTAGAAAAACCTCTCATTTTCTAGCCTGTGAATTACGGTGCGAACCAGAAGTGATCATAAAATCCCTGGGAGGTTCGCACCGAGAATTTTACGGTTATGGAGGGAAAATGAGAGGATTGGCTGAAGTGATTTAATGAAATATGTGCAAATTGCCCGTGATTATTACTGGTTTTATGGTATAATATGTGTGAATTTGCT # Right flank : TTACAAAAATGAACCGTTGAGGGAGTCTCTGCCAGCACTAGCAGCTTATATTATATTTATGTAAAAAAATAGTTCACAGACGTTAAAAATAAATAAATGGACAGAGGAGACAAGGATTGAAATACATTTTTATACATGGACTTGGACAGGGGCCGGATAGTTGGAATAAAACGGTTTCCTGCATGAGAGAACAGGAAGAGATTCAATGCCTGAGCGTATTTGCTTTAAAAAATTGGGAAGAGATTTCGTATAGAAGAGTATATGAGGATTTTTCGGCGTACTGTGAGTCTGTAAAAACGGAGCTTGGGCTTTGTGGTCTTTCTCTGGGCGCTGTGATTGCATTAAATTATGTGGTGGAGCATCCGGGAAAGGTAAAGTCACTGGTCTTGATAGGGGGGCAGTGCGTGATGCCGAAGGGGCTTTTAAGATTGCAGAATATGATATTTCGGTTGATGCCGAATGGGATTTTTAAGAAAATGGGGATAGGTAAGAGAGAACTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTAGCGATAGCGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 11209-11776 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHP01000014.1 Clostridium sp. 1001175st1 A10 strain 1001175st1_A10 NODE_14_length_126596_cov_30.0559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11209 33 97.0 33 ..........T...................... CACTGCATCAATTTCCCGTTTTATCCTTTGCAG 11275 33 97.0 35 ..........T...................... CCCTTGGCAGACGGTCCTGGAACCGTAAAGATTGC 11343 33 97.0 33 ..........T...................... TAACAAATTTAAAAAGGGTCAAGGAACTACATT 11409 33 100.0 33 ................................. ATGATAGGCTGTATCAGGCATGTCAATTCTATC 11475 33 100.0 34 ................................. CGAAAAATGGCGGATGAACTGGAAGTAATCAAAC 11542 33 100.0 35 ................................. GTCACCACCAGCGAAAACCACGCCATTGAGAGCTT 11610 33 97.0 34 ...........A..................... CGTAGCTCCATTAATCTGTTCCGCATAGTTCCAC 11677 33 100.0 34 ................................. AATTATTTCAGTTAAATCCTCTACTTTTTCTTTA 11744 33 93.9 0 .......................A........C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.0 34 GAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Left flank : GTATTTTACAGTGTCTTTTTATGACAAGGAGTATAAAAAAGCACTGAACATCTGCGGAACACGGTCCGGACGTGACTGCGATAAGGCGGCAGAAGCCGGGCTGACCCCTTATTTTATTGATGGTACTACGGCCTTTGAAGAAGCAAATATGATTTTTGTCTGCCGGAAGCTATACTGTGATCCAATGCCCGGTGATAATTTCCTGGATAAGGAAAATGATGAGAAATGGTATCCGGATAAAGATTATCATACAATGTACATTTCGGAGATTGTGAAGGTGCTTGTGAAAGACTGAGAAGAAAATTAGCTGTGAGGAGTGGCTGCACGGGGCGGTAGCTGGTGCGAACATTAAGTGAACATAGAATTACTGGGAGGTTCGCACTGGAAATTGGGGGAAAATTGGGGGAATATGGAGTTGATGATTGATTTTTAAAGGGATTGTTGTACAATATAGTTAAGGATGTGAGGGGAGTTGGGGAGGGAGATTTGGGAAAATTGCT # Right flank : CCATATGGAAAATCATACTAATGTCAACCAATCTGTAAAAAAAATGTCCCACAAACACTTTGATCTTCACAAAAAAGGACCTTCAGATCACCATATCCGAAGGTCCTTTTTTTATCCAATTTCCTTTTTCTACCTAATCACCAAGATAATAAAATGCTGTAAAATACCCTTTCTCATTATAGTAAAGATCATTACCGTATACGGTATATTCAGCCGAAGCCTCCTCTTTGCCTTCTTCAACCGGTTCTCCGGCATATAGTTCCTTTTGAGTTTTTGATGCTTCCGCAAGGTTGGTATAGGTGCCTGTGACGGCGCCTTTGAGGATATAGATATCGCCTTCATAGACCGTTTTCATAATCGTATCGTCACTGTCCTCCCACAGGGTATACGTTCCGTTCTCTAAATCCGCGGTGATCGCCGCCTCATTGCCGTAAGTGGAGGGATCCATACCTTTGTCATACGTCAAATAGCCGTTTGAACCGCTGGGCCCGGCGTTGGGA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Alternate repeat : GAGTCATCTCTTGCGGGAGATGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 90006-90775 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHP01000014.1 Clostridium sp. 1001175st1 A10 strain 1001175st1_A10 NODE_14_length_126596_cov_30.0559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 90006 33 100.0 35 ................................. GTCCCGGAGACGGAGCTCCGCGCGCTGAAGGAGAA 90074 33 100.0 33 ................................. CGCTATATCAATGACTGTTTCCTTGTCTCGTAT 90140 33 100.0 33 ................................. GTTGATTGGACGGAATTACTACAGCCAGAATTT 90206 33 100.0 34 ................................. CTCCCTCTCGTGTCCCGGCTCTCGGATAAATCCG 90273 33 100.0 35 ................................. AGGAGATTCGCATACACATGCTTTTTGTCAAGGTG 90341 33 100.0 33 ................................. TCCGCTATGGAATCAATCAGGCCCATCTGGGTT 90407 33 100.0 34 ................................. TGTTTCCTGCTCCAGAACACTGTCGCCCGCCTCG 90474 33 100.0 35 ................................. GATAATCTGCATACAGTAAAAGACATATACTTAGT 90542 33 100.0 34 ................................. GAGAGAATGGACGAGGTTATAAAGGCAGCTCTCG 90609 33 100.0 35 ................................. TCTCTGATATGAGTGATTGTTTCATTGATCTGTGT 90677 33 100.0 33 ................................. GTGATGCATTCGGCATATCACTGGCTCAGTTTT 90743 33 93.9 0 ......................A.....A.... | ========== ====== ====== ====== ================================= =================================== ================== 12 33 99.5 34 GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Left flank : TGCTGATTACATACGATGTAAATACAGAGACTGCCGCAGGCAGAAGCCGCTTACGCCGAGTCGCAAAGCAGTGTGTTAATTATGGCCAGCGTGTTCAGAACTCGGTGTTTGAATGCAATATGGATGCGGCAAAATGCAGAGCTGTAAAGGGAATTTTAGAAGGAATTATTGATAAGAATGTGGATAGCCTCAGATTTTACTACCTTGGTGATAATTATAAGCACAAGGTGGAACATATTGGTGCGAAACCAGGATTTGATGTGACAGAACCATTAATTTTTTAGGGCAGTTGTTCTTTAAGTAAATAGTCAGACAATTTTTTTATGTTAAAGTGCGAATGTCAAGTGAACATTAAAATACCGGGAGATTCGCACCTGTATTTTAGATGTAGATAAACCGAAATATGTAATATAGTTTGACAAAATGATTGAATAAGTCAAAATAATAGAGTTCTGTTGCTGACGAGGAGAAATTCACTTGTAATTTGACTTATATTTGCT # Right flank : TATTAACGTATTTCTCGAGGCATTTTACATCTCCTTCACTCCATATTCCCTGTTGACAACGAACCTCCTTGTCTCAGGGAATCTAATAGGTGCCTAAATGTTGAGAAAGGCGTTTAAAACAGCTGTCTGGAGCAATCGTTTACATGATACCCCACTCATTCTCAACAAGTTTTCCCTGTATAAACGGAGAGTTTCCCTGTATAGCCTGTTAAAAATTTTTCAAAAATCTATTACTCATCGGTATGCATTATTGTATTTATAATTGGCGTTATATCATTTCCTTTCTTTAAACAGCTGCAATAATACCATATTACCATACACAGCCTGTGCCTGCTTCTGCACTGCTGCCTATCCCCTCATCAGAAAAAAACAATTATTTAACACAGAACGGCAAAGGTTCCCGAATTACTGAACCTTTGCCGTTTTAATGTCAGAAATAAACCTCATATCCTTTCAAAAAGCACCATAATATGGTAAAATATTCCGATAATCACGCCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //