Array 1 42875-39307 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASO01000075.1 Pseudomonas indoloxydans strain JCM 14246 75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42874 29 100.0 32 ............................. TCGATGGTCACACCCTTGGCTTCGATGCCGTG 42813 29 100.0 32 ............................. TAGCTGAGCACGCCGGCCAGGGCACGGTGGAA 42752 29 100.0 32 ............................. CTCTGCGTCAAGATCAGTGAGCGTTGTTTTTT 42691 29 100.0 32 ............................. CTGGACGAACAGGTCGGCTGGCACAAAACCCT 42630 29 100.0 32 ............................. TCGACGACCACGACCACCTGCTGAAAGAACTC 42569 29 100.0 32 ............................. CTGTAGGTTTCATGCCGGCCACGGGCGACCAC 42508 29 96.6 32 ............................T TGCTCGCGCAGGATCTGCCCGGCGGCGCTGGT 42447 29 100.0 32 ............................. CCGGAGCTGTACACCTTCACCGACTCGCCCTG 42386 29 100.0 32 ............................. GCGGAGATCAGCGCCATCGTCTGGCTGGGCGG 42325 29 100.0 32 ............................. CATGAGAATGCTGCGTCTTTGATCCAGCCTTT 42264 29 100.0 32 ............................. CGGTTGAGGGCGTCAATGGCGCGCTCGCGGAT 42203 29 100.0 32 ............................. TGCGGGTCTCGCTCATGCTCTCGATGACATAG 42142 29 100.0 33 ............................. CTGCATAGGGTGAACAGGGCAACGAGCGCCAGG 42080 29 100.0 32 ............................. CACGTCCACAGCAGGCTGAACCACTCGCTGCT 42019 29 100.0 32 ............................. CCGGCCATCGTGGTCGCTGAGCTGCAGGTCGA 41958 29 100.0 32 ............................. CGGGTCATGGTTAGGCTCCTTCTTTGCGGTGC 41897 29 100.0 32 ............................. GGTCGAGAGCTTGAAGCCCTGCAAAACTCCAA 41836 29 100.0 32 ............................. CGCTAAACGCTGACGATATCCGCCCCCTGAAT 41775 29 100.0 32 ............................. ACGACCTGCGCGCCGCCGTGGAGGCCGCATCC 41714 29 100.0 32 ............................. CCACGGACGCGGTAAAAAGCGAGCTGGAACAG 41653 29 100.0 32 ............................. ACGGGGGTTGCGGCTAACAATGCAGCGCCGCA 41592 29 100.0 32 ............................. TGAACTCCGGAAACAAAAACGGCCCCGTAAGA 41531 29 100.0 32 ............................. CCGGCAAAGAAACAGCAGCAGCGGCCAGGGAG 41470 29 100.0 32 ............................. TTCCTCGATCCGCTCCAGCGCTTTCGCCAGCT 41409 29 100.0 32 ............................. ATCTCGGCCCGCGCACGTTCTACCGCCACGTT 41348 29 100.0 32 ............................. GCGCTGTGGCCTTCCGTGCCGGTGTCCCGCAC 41287 29 100.0 32 ............................. GCTGACATGGAGGGCGGTATTCACCACCTCTA 41226 29 100.0 32 ............................. GATAGTCACGGCGCTGGCCACTCCTGATTAAC 41165 29 100.0 32 ............................. CAAGCTCGCGTGCTGTCCGCGCTGGTATCGGC 41104 29 100.0 32 ............................. ACTGTATTCGGTGCAGTGTCCGTGTCCTACAG 41043 29 100.0 32 ............................. CGCTCTATATACGCTTCATCGCGGTCATAGGT 40982 29 100.0 32 ............................. AGTTCGATTACGCCCGACGTATACATCTTCTT 40921 29 100.0 32 ............................. ACCAGATCATCACCGACAGCTATGCAATCTAC 40860 29 100.0 32 ............................. CCCGCGCCGTGGCTGGCTTTGAGGGTGGCGTG 40799 29 100.0 32 ............................. GGCCTGCTCCAGCATGCTCCTGCGAGGCTGAT 40738 29 100.0 32 ............................. AGCGTTGAGCAGCAGTCCCGCGTTTTGAGTGC 40677 29 100.0 32 ............................. GCCAGTGCGATGAACACGGTGAGTTTGACGGC 40616 29 100.0 32 ............................. ACGGTAGAGGTTTTATGTGCGAATTGCTCGAA 40555 29 100.0 32 ............................. GCTACATGGCTGTACTACTACGGTGCTAATCC 40494 29 100.0 32 ............................. GCTTAACGCTAGTCCCCTGGTCGTGCGGGCCA 40433 29 100.0 32 ............................. CTCGGACGCTTGTTCGTGCGGCGTGATGGCGC 40372 29 100.0 32 ............................. TCACGGCCTGAATGTCGAGGATGATCGATTCA 40311 29 100.0 32 ............................. GCGGCAAACAAGCCGACGCTAAGCAAGCGAGA 40250 29 100.0 32 ............................. ATTGGATCAGCGCAGCGGTGGATGTGCGCAAT 40189 29 100.0 32 ............................. CGGCAGAACTAGGTTCAAGTCCTAGGATGGCA 40128 29 100.0 32 ............................. ATTTGACCGAGCTTGGCGGGTCAGTGCCGCAA 40067 29 100.0 32 ............................. TCATGGCGCCAGGTCATGCACATTGCATCCAC 40006 29 100.0 32 ............................. GAGGTATTCGACGAAGCCTCTCTGCGGACTAT 39945 29 100.0 32 ............................. CTGGGCGCGAACCTTGTCGTGGTCAGCCTTAT 39884 29 100.0 32 ............................. GTCCAGGGGATGATGCGGTTCGCGGTGACGCG 39823 29 100.0 32 ............................. TGGTGGCACCGCTGCCCGACCGCCGCGCCAAT 39762 29 100.0 32 ............................. GATGCGCTAGATGCGCAGCAGGCCTACCGCGA 39701 29 100.0 32 ............................. AACGCCAGCAGGTGGCCGCCTGGCTTGAGCAC 39640 29 100.0 32 ............................. CGGGCCTATCACGCGCGCGGGAAAATCGTGCG 39579 29 100.0 32 ............................. CCGTTCAAATGCCCACCGGCCGGCCTTCACCG 39518 29 100.0 32 ............................. CCGGCCTCGATCAGGGTGTCCATGTAACGGGT 39457 29 96.6 32 .........................G... AAGTTGGCCAGATCGCATTTCAGGTAGTGCGC 39396 29 96.6 32 ................T............ CAGGAGATGGCGCTGGAGTACATCGCTGCCTG 39335 29 79.3 0 ...........TTT...........G.TT | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GACGAAGATCATTCCTACCATTGAGGAGGTGCTGTCCGCTGGTGGTATCTCACCACCTGAGGCGCCGCCGGAGTCCGTGCCGCCTGCTATCCCCAACCCCGAAAGCATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTGGTGGTCACCGAGAACGTCCCGCCGCGCTTGCGCGGGCGTATGGCCATTTGGCTGCTGGAAGTGCGTGCCGGTGTCTATATCGGCGATGTTTCCAAACGCACCCGTGAAATGATCTGGGAGCAACTGAGCCAGGGTCATGAAGACGGCAACGTGGTCATGGCCTGGGCGAGCAACCATGAGTCGGGTTACGAGTTCCAGACACTCGGTCCCAATCGCCGGCTCCCGGTAGAGTTTGACGGCCTGCATTTAGTCGCCTTCCATCCCCCGGGAAACTCTGATCTTTAACAAGAAAAGTTGGTAGATTTTTAGCGGCTGATTTTTCCTTTAAGGAACAATTGGTTACGCTAAGT # Right flank : CGAGGGGGAACCCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTCTGTGACGCGGATGAAAAGGGAACAGGGTGCGGCGAATCTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTTCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGACAACGGGCGTTTCGCCCACCCCCTTATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACACAACGGCCATCACGGCTTTCGGCCTGACCGCCAAGCTCGCTCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTACGCAGCCTGCTGACCACCGCCCTGGTGTTCTGCTTCTTCGAAGTGTTCCCGCATCATGCGGTGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54588-52361 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASO01000075.1 Pseudomonas indoloxydans strain JCM 14246 75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54587 29 100.0 32 ............................. ACCTTCGAGCATCGCCGCTTTACCTGTGCTGC 54526 29 100.0 32 ............................. GCGACGACAGCGCCGCGCTGATCGCCCGCGCC 54465 29 100.0 32 ............................. GCCCTGGCCGTGGCCGCCATGGCCAACCCCAT 54404 29 100.0 32 ............................. GCCGGCTTCTCCGGTGGCCTGTCCGGCATTGC 54343 29 100.0 32 ............................. CGGCCGAGCTCGATGCGCACCTGCTGCCCAAG 54282 29 100.0 32 ............................. CCTACATCCCCCGCCGCATCCTGCCCGAGCGC 54221 29 100.0 33 ............................. TTGATGATGGTGGCGGCAATGCCGGACAGCCCA 54159 29 100.0 32 ............................. CCGGCGATGGGTCGGATAGATACGGTATCCAA 54098 29 100.0 32 ............................. ATTGCTGGCTCGGGATATATTGATACTCATCA 54037 29 100.0 32 ............................. GATGCTCTTTAAGTCCGGCACTTCTGACTGAG 53976 29 100.0 32 ............................. CCTATTGGGCAATGGTCGATTCGTTCGAGAAA 53915 29 100.0 32 ............................. GACATCCTTGGTTGTCACCTTGTCCAGATACC 53854 29 100.0 32 ............................. TCGTAAACACTCAGGTTCGGGAATATGAGAGC 53793 29 100.0 32 ............................. ACATCCTTGGTTGTCACCTTGTCCAGATACCG 53732 29 100.0 32 ............................. TGGATTGCCGGCACCTATCCGAAGCTCGCGCA 53671 29 100.0 32 ............................. CGCGGCGACCTCGCCGGCTACGTTACTGCAAT 53610 29 100.0 32 ............................. AGTCAGATGGGCCATTTACTGGGTCTAATGTC 53549 29 100.0 32 ............................. TCCGCTCGCTGTGCCCAGCGCGATGGCTAAGA 53488 29 100.0 32 ............................. CTGGTTTCAGATGCTAGCAATGGAGTAATTAC 53427 29 100.0 32 ............................. ACCAACCGAACTATCTGGAATAGTAGGCAGAA 53366 29 100.0 32 ............................. CCGCCTGAGCCGTACAAAGGCCAGTGCGATGA 53305 29 100.0 32 ............................. GCTGTCGGCATATACATGCAGGACGTTACCTT 53244 29 100.0 32 ............................. CTGGATGTGACCCACGACGCGCTGCAGATGGG 53183 29 100.0 32 ............................. CGTGAGGGCTTCGCGCTCGATGGTGCTGACGG 53122 29 100.0 32 ............................. CCTTGGATGCGGCCGATGCTGCGTTGCTGAGC 53061 29 96.6 32 ............................A GCATTTGCAGTAGCAATGCTGTCGTTAATCAC 53000 29 100.0 32 ............................. TCGCGCCCTTTGCTCTGCGCCCGTCCTGGTTA 52939 29 100.0 32 ............................. TCTGGCGAAGAAACACGGCATCGAGGCGCGGC 52878 29 96.6 32 ............T................ CGCAGCGAACCCAGGCGCGGCAGCAGCTGGCA 52817 29 100.0 32 ............................. GCCCGAGCGCCGCCGAAATCCTTGAGCAGTCG 52756 29 100.0 32 ............................. TGGGCTATCCAGATCTTGCCCGCATCGATATC 52695 29 100.0 32 ............................. CCCACCGCTGCCGTCAGGCAGGCCAGCACGCT 52634 29 100.0 33 ............................. AACGGCGGCATGATGCTGCACGCCACCGCCAAC 52572 29 100.0 32 ............................. CCGCCTTACTTCGCCTTTTGTCCTGAGTGCTA 52511 29 96.6 32 .........................G... GCCATCGTTGTTGAGGATGACCAGCTGGAGCA 52450 29 86.2 32 ..T.........TA............T.. AACTGCGACGAGAGGTTGCCGATGGGCAACCC 52389 29 72.4 0 ...C.......ATG...........GAGT | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : AGGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGTTTGGACGTGCTGCGTGCACTGTCCAAGGAGCCCGGCGTACTCGATGCGCTGTTCGCCGAACTGGGCGATGGTCATGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTGAAGGCAGATTTCGCTGATACAGCCGATATCCAGTACCGCGCTCGCCAGCTCACCGAAGACATGGCCGTGGCACTGCAGGCGAAGCTGCTGCTGGAGGCCGGCAACGCCACGGTGTCCGACGCCTTTATCGCCAGCCGCCTGGAAGGCCGCGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCGATCTTTAACAAGGAGAAGTTGGTAGATTTTTAGCGGCTGATTTTCTCCTTTGAGAACAATTGGTTAGGCTAAGT # Right flank : AATACCGGCCTTGCTCCAGAGCTAACGCCCCAAACGTTTTTATTCCATGAGTTCGACGATGCAAGGCTCAGGTGCTGGGAATCTAATTAATGGTTTGCAGCAATAGGACTTCGCACGGTTGTCAGGTAGGGGGGCGTGCTGGCACTTTGTTGTGCAAGCCTCACGCAATGCAGGGAATGACCAATGAAAGGATTCGCCGATCTCAGCGACCAGGCCCGTCGCCTCTGGGCCAAGAGTGGTGATGGCTACGGCCATGGCGTGCTGGCCCATTTGCTGGACGTGGCGGCGGTGGCTGAGCGGATGCTGGCGCACGAACCGGCGAGCACGCTGGATTGGGCCGCTCAGACGTTGGGATTGGAGCGCGAGCAGGTGGCGCGCTGGGTTGCCTGTCTGGTGGGCCTGCACGATTTCGGCAAGGCCATTCCCGGCTTTCAGGACAAGTGGCTCGAAGGGCGGCAGGCCGATGAGGCGTTGGGGCTGACCTTTCCCTCCCGTGCTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30297-30865 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASO01000130.1 Pseudomonas indoloxydans strain JCM 14246 130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30297 28 100.0 32 ............................ TCGGCCAGTTGCGCCTGCAGCTCGCGCTGGCG 30357 28 100.0 32 ............................ ATCAAAACCACAAGTAGCCCAACGGCGAAAAG 30417 28 100.0 32 ............................ TGGGACACCAAAAGCAGCGTCTACGGACGTGG 30477 28 100.0 32 ............................ ATGCCTGGCTCTGGAACCAGGCCGGATCGACG 30537 28 100.0 32 ............................ ACGTCCCACGCTTTCATCACCAGCTGGGTTTT 30597 28 96.4 31 ............G............... TGGTCGAATCCGCCCAGCTCTACGCCCCGCC T [30598] 30657 28 96.4 31 ............G............... TTCATGTGCGCGGCGCGTGGCTTGATCTTCT T [30658] 30717 28 96.4 32 ............G............... AAACGATCCTGGCTGTCCTGAAGGCTGGTCTT T [30718] 30778 28 92.9 32 .T..........G............... TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 30838 28 75.0 0 .T.........T.........C.GCC.C | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 CCTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGTGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTCACCGATGCCGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : CCTCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41299-43188 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASO01000130.1 Pseudomonas indoloxydans strain JCM 14246 130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41299 28 100.0 32 ............................ GTGGTGCAAACGCGCCTGCCGCTCGATGCCGG 41359 28 100.0 32 ............................ AGCGGCAGATCTACGTGCCGGCCGGGCCGTCG 41419 28 100.0 32 ............................ ATTGAAAGCTACGTGGCGGCCGCGACTACCGC 41479 28 100.0 32 ............................ ATGGGGCAAGGCCCGCGCCGTCGACGGTGTGC 41539 28 100.0 32 ............................ ACCTCGCCGGACGTGCCAGACCATACCGAGAA 41599 28 100.0 32 ............................ TTGCCAATCCTGATTTTTCGAGCACATGGGAC 41659 28 100.0 32 ............................ AGGCATTGCTGAACCCATCGTGCCGGGCAGCC 41719 28 100.0 32 ............................ AGCTTCGGGAAGCGCTTGTGGCGAATTGAATC 41779 28 100.0 32 ............................ GGCAGGAGTAACCTGGCCACCTGGGAACTCAT 41839 28 100.0 32 ............................ CTGCGCAACGGCCTCGGCCAGCGGGCTGATGC 41899 28 100.0 32 ............................ ATCACGGCCAACGGCGGTACCTTCGCCGACGA 41959 28 100.0 32 ............................ ATCAACTGGGGCGTGATCAAGGCCGGCAACGT 42019 28 100.0 32 ............................ AGGACGGGCGAGGAATGATGTTGCTGAAAAGC 42079 28 100.0 32 ............................ TTGCGCGCCGGCTTGGGGTTGTAGATCAGCCG 42139 28 100.0 32 ............................ TGACCGACGAGAACGACGGCGGCGGTCGCGCC 42199 28 100.0 32 ............................ TGGTTCACCCTGGCCACCGTGCGTGCACTGGA 42259 28 100.0 32 ............................ ACGCCCTGCGCGTAGTTGCAGTACCTGCCTCG 42319 28 100.0 32 ............................ ATAAGGCGGCGACTAGGGATTCCAGTCGCGTC 42379 28 100.0 32 ............................ TCCAGCTCCGCCAACTGATCGTCTGTAATACT 42439 28 100.0 32 ............................ GTCTAAGGCGAAGTCTGGCTCGGGCAGCTCAG 42499 28 100.0 32 ............................ GTGGCCGAAGCGGAGAAGGTGCTGATGGCCAT 42559 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 42620 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 42680 28 100.0 32 ............................ TGGGCGATGGTGGCGAGGATGGCGCCGATGGT 42740 28 100.0 32 ............................ AGCAGCAGCCAGTGCGCGGCAATCCGTCGGCA 42800 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 42860 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 42920 28 100.0 32 ............................ ATGGGTTGGTCGGCGGCGGTGCTGGTGGCAGC 42980 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 43040 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 43100 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 43160 27 82.1 0 ......................TT.CG- | AA [43181] Deletion [43187] ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATCGGCTGATGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58514-57248 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASO01000106.1 Pseudomonas indoloxydans strain JCM 14246 106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 58513 29 100.0 32 ............................. TACTCGGCCGCATCATACGGCCCATCGACGCC 58452 29 100.0 32 ............................. CCTCGGGCGATCATGTGGGGCTGAGTGCGGGC 58391 29 100.0 45 ............................. TACTCGGCCGCATCATACGGCCCATCGACGCCACCCCGGACCCGG 58317 29 100.0 32 ............................. TGCCGTCAATTTCCGGCCTTATCCAGCGTATC 58256 29 100.0 32 ............................. CACCTGGGGCGCGCAGTGCAGCGGGGAGGGAG 58195 29 100.0 32 ............................. ATCCGGCTGATCCTGGCTGCCCAACTGATCAG 58134 29 96.6 32 ............................T TGCCCACGCCCACGGACGGCTCCAGCACGCGC 58073 29 100.0 32 ............................. GCGCGGGATACGTCGTGCTCGGTGCGGTTCAC 58012 29 100.0 34 ............................. CGGAGAACACCTCCGCACTGTCACAGCTGGCTCC 57949 29 100.0 32 ............................. CGTGCTCGCGTGCTGTTCTGCGCTGAGTGGTA 57888 29 96.6 32 ..A.......................... CGCACGCAGGGCCGCCAGTTCGGCCTGCAGTT 57827 29 100.0 32 ............................. TCCTCGCCATGCTTCACACTGGGCGGCTGCAC 57766 29 100.0 32 ............................. TCCTCCTTGGTGGGCAGCAGCGGCATGAATGC 57705 29 100.0 32 ............................. CGTGGTTGCCGGGGAGTTCTCGGATAGAGATG 57644 29 100.0 32 ............................. GGTATCTGGCTTAGCCATAGGCGCTGGCAGGT 57583 29 100.0 32 ............................. CCGCCATGGAGGCGAGGGCTTTCTTGCGATAT 57522 29 100.0 32 ............................. CGCATGCTGGACGTCCAGAACAAACATACGGC 57461 29 96.6 32 ....C........................ GAGCCAACTTCGAGCTGAAGATGGCGAATCCG 57400 29 100.0 32 ............................. CTCGACATGAACAGCATGGCGCGGCTGTTTAC 57339 29 100.0 33 ............................. TGGGCGCTGGGCTGGTCTGACGGCACCGCAGCC C [57330] 57276 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ============================================= ================== 21 29 99.4 33 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : G # Right flank : CAATTGGCCGAGCATTGCGCGGGCGTATCCCTCGCGTCCGCAGAGGAACCGACCTTACTACCCTGCTCCGAACTGCTCCGGCCAATCCCGTCGGGTGAACACCTGCCCCTGCTCACGTACGCGACGGACCTCGTCCAGGTCCAGGTCGGCGATCAGCCAGCGGCTTTGCGCCGGGCAGAGTTCCGGGCTTTCGGCGAGCACGCCGCTGGGCGGCATGCCGTAGTCGGAGGGGACGTAGAGGGCGGCGCGGCCGTAGTTCTCGTCCAGCGCCGGCGACCAGGGCGCGAGGCCGACGGTCGAGGCGTGCAGCACGGCAAGCTGGTTCTCCAGGGCGCGGGCCTGACAGCCGATGCGCACCCGGTAGAAGCCGGCCTCGGTGTCGGTACAGCTGGGCGCGAGGATCAGGTCGGCGCCGTCTTCGGCCAGCCGGCGCGCCAGCAGGGGGAATTCATTGTCGTAGCAGATCAGGATGCCCAGCTTGCCCAGCGCGGTATCGAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //