Array 1 27421-25879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJESX010000012.1 Staphylococcus pseudintermedius isolate 18S03460-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27420 36 100.0 30 .................................... CAACAATCCTCAATTAAGACTATACGGGCT 27354 36 100.0 29 .................................... TTTAAGAGAACGTGCAGACATGCCACAAG 27289 36 100.0 29 .................................... ATTACCCTTTTTGATTACCGATAAGTTAT 27224 36 100.0 29 .................................... ATAAGATGTATAGAGAATTAGCTTATACA 27159 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 27093 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 27027 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 26962 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 26897 36 100.0 29 .................................... ATTTTGTACCGAATAGCGTTTCAGGGCGC 26832 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 26766 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 26701 36 100.0 29 .................................... TTATTTGGTAGCTAGAAAGGAGGTTAATA 26636 36 100.0 30 .................................... ATGTCATGCAACGTTATTTCCATGAAGATT 26570 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 26504 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 26438 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 26373 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 26308 36 100.0 29 .................................... ATTTTGTACCGAATAGCGTTTCAGGGCGC 26243 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 26177 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 26112 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 26046 36 97.2 29 ............................A....... TCACAAACCGTTTATGAAAAAAATACATC 25981 36 97.2 30 ............................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 25915 35 88.9 0 ..........................-.CA.C.... | CT [25882] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.3 29 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAATATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //