Array 1 31628-32835 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXBY01000021.1 Clostridium argentinense strain 113/33 contig00021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31628 30 96.7 35 ...............A.............. GTGTAAAGAACTAGTAAAGCTAATAGCAGATGCAG 31693 30 96.7 35 ...............A.............. TGACTATAAACATTGTTTTTATATTTAAAATAAAT 31758 30 96.7 35 ...............A.............. TGTTGCATTTTTTCTTTTAAACCTTCTACCATTTT 31823 30 93.3 37 .......T........G............. AATTGATGAACTGAACATTTATATTTTTTGCAATAAA 31890 30 100.0 36 .............................. ATGAGAGGTAATTCGAAGGCATTAGGAATTGAAAAA 31956 30 96.7 35 ................G............. TAGTCTTTTGAATAACTGTGCAATAATTCTATAAT 32021 30 93.3 36 ...............AG............. ATATTTCCAATTTGATCTTGAAGTTTTTTAAGTGCA 32087 30 93.3 35 ...............AG............. GTTAGTGCTAAGTCTATTCTATCTTTTAAATGTTC 32152 30 96.7 35 ...........G.................. TCAGCCTGTTTCCTAAAATCATTAGCATTTCCAGG 32217 30 100.0 36 .............................. TTAAATGTAAGCAACTATGTAAGTTTCTTTCTTTTC 32283 30 93.3 37 ...............AT............. TATTTAGGCATTGACACGTATACCATAGGATTTTCTT 32350 30 90.0 35 ........A.......G.G........... GTAGTTTCTAAATCAATTTCATCATAACCAATAAT 32415 30 93.3 36 ........A......A.............. CCATTTGTAAAACATCCAATTCCTTTATGAATCCAT 32481 30 90.0 36 A..............AT............. AGGATAAGTTTTATTGTTAGAAGTGTATTATAATCT 32547 30 100.0 35 .............................. TACTCTTACCACCTTTGTATTTAAAAGTTGAGCAA 32612 30 100.0 34 .............................. ATAACTACTGTAGTAACAAAGTCTTTTAAATCAT 32676 30 96.7 35 ................G............. GAGGATAGCAACATAAAGTCTCTACTCTGAATACA 32741 30 90.0 35 A.......G......A.............. AACATTGCCATAGACACTTCGTCTAAATTACAATT 32806 30 76.7 0 A..A...........AT......A....TA | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 94.4 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : GACGTCCTAAATCTCTAAGAGGTGTATCGCCATCGCCATCAGCGACAGCAGCATAAGTAGTTGCTACATTAGCACTTGTAATCATAGTGATACCTAATAATGTACAAGCTAAAACTTTTTTTAATTTCATTTTACTTTCCTCCAATAAACTAAAAATAATAAAAATAGTATGTGTTAAGCTCAACATGTACTATCTTACCATAACTTATAAGTAATGTAAACATTTACCATAAATGAAATTAAATATTACAAATGCACTCTCGAAATTTTTGTTTCATAAAAGGAAAACTTAAATAGTTGTAGAATAAGTAAGGTAAAGATTATTTTACCAACCATCTTAAATATTAAATACCTCCTAACAAATTGAAAATACAGGCTTATGAGGTATTTTTTAAAAAAATTTCTAAAAACATAAAGCGGTTGGTAAAAATTTTAATAAAGCCTTTATTTTCAATAAGCTAAAGGATATAATGAAAATAAAGAATGGCTTGATTGCAGTA # Right flank : AAAAAGGACTATTAGGATTGTGCCTAATAGTCTTTTTTCATTTAAAATATATTAATGTAGTGTTTTCGTTAGGAGCTTTCTTATAATGAATTTATATTTTATATTTATCAATCTAATGATAATTACTTTTACTGTGTAGGCATATATAAATTTACTATTAAAAATCTAAATATTTTTTATCTACATTCCATTTATGGATGTTATAAAATAAGATGTCGAATAAAACTATATATAATATGTAGGAATTTCTTAAATATATTTGATTCTTTTAAATAATAGACGTATAATATGCGTATAAAGTAATTTAAAATAGTCCTATAAATGAATGAAAAATTTATTGGTATGTGTTTTTAGAAATTTACAAATAATATAAAGGTTTGAAGTTAGCAAACCGTTGGTATTACTCAAGTAGATACCATAAATAAATTATTCGGATATACCATTCATAATGATAAAGGTAAACCTACAAATTCTGAATTTATTGCAATGGTTGCAGATAA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 115871-116100 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXBY01000005.1 Clostridium argentinense strain 113/33 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 115871 32 100.0 35 ................................ TATATTTTATTTAGACCATTTTGCACATCTGTAGG 115938 32 100.0 33 ................................ AAGTTTATTTTTCCTAGCTGCCATGCTAGGCCA 116003 32 100.0 33 ................................ GGTACAGCTTTGTATTGTTCTTTCAATTTGTCT 116068 32 78.1 0 AT........T.......A......C.A.C.. | C [116090] ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 34 TGATTGAACCATAACATAGGATGTATTTAAAT # Left flank : TCAGTTATAAAAATAGGTACAAAGGTAAAAAACATACGTTTAGTTGATGGAGATCACGATATTGACTGTAAAATTGATGGCTTTGGAGCTATGAAATTAAAATCTGAATTTGTTAAAAAGATATAAATTGAATTTTACATAAGTTGTGGTATAGACACTGTAAAAAATGAAAAAAGAGTAGATATATTTATTTTTATATAAATATATCTACTCTTTTTTATTGGGTTTTGTTTTAAGGTTACATTAATAAATTTACATTATGGAGGATATCATGGCATGGTCAACATTAACAACAATTCAGAATATGTCCTAAACTATATAAAATTTTCCCAACTACATTCAAAATAAAACTTCTCCTAATCAATCGAAAAATCAACGTTTAGGAGGAGTTTTTTATTAAATTTATCAAAAATTCAAAACGGTTGGTAAAATTTTTAATAAACCCTTCATTTTCAATGGATTAATGGGTATAATGAAAATAGAGAATGGCTTAATTGCAG # Right flank : TAGCTATAATAAATTTCAATATTGTATATTTAAAAAACTACATAATTATAAAAGGATTTCAACCTATCTAAGTAAAAAATTATTTAGATAGGTTATTTTTTTATTTAAAATATTTTTATGATATTTAATGAACTGTGGAGAAAAATGGAGTAATAGAGGGATAAGGTTAGATAAAGAATGAATTGTTTATTCATTCTTAGTGGAAGACACTTTATCATAGGAAAACCTATGTAGAAGTGGCTGTAAGGATTTGTAAAGAATATATAGGTGGGCTAGAATTAAAGTATGTATATACATTATTTTAATAACTAGTATAGAAAAAGGAGTTGATTTTATGAATAGGGCTATTTTAAGTGTTGATTGGGACTATTTTGTAAAAATTATACCTCAGTGGTGTGGCTCCTATATTGAAAACCAAAGAGGACTTCTTTCCGCTTGGTATAGAAGATATATAGAAGAAGGTATAAAAGGAGTTAATTTAGAGGAAGAAATAAAAGTAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATTGAACCATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 32769-28407 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXBY01000035.1 Clostridium argentinense strain 113/33 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 32768 29 100.0 37 ............................. TATTCTTTATAGCTTTATCACAATACTGCTCAATATC 32702 29 100.0 36 ............................. AAAGTATAAGCTAAATCTTCATATCTTTTACGTAAA 32637 29 100.0 36 ............................. GAAACAATAAAGTTTTATGGTACTAACACTTATAAA 32572 29 100.0 37 ............................. TTTACAGGCGACTTTGCATATTTCTATGAAGAAATAG 32506 29 100.0 37 ............................. TAGAGATATTGAAATTAGTAGATTGTAAATAAATAGA 32440 29 100.0 36 ............................. TAGATTGGACACAACAAAATGTAATGCCACAAGTAC 32375 29 100.0 36 ............................. ATTGAAATAACGAAAGAAGAAGCAAAAGAAAAACGC 32310 29 100.0 36 ............................. TTAGATGGAGAATGCGGGAGTGTTGAAGGAGAATTG 32245 29 100.0 36 ............................. ACGAAAAACAAGAGCTAAGTAGAAGAATAGTTCCAT 32180 29 100.0 37 ............................. TTGAAGTTTGTTTATATTCCTTTGCCAACCGAACAAC 32114 29 100.0 37 ............................. GCTAGAACTGTAGTTGAATGGTTTATAGAACAGGCTG 32048 29 100.0 36 ............................. TTGAAGACATTGGGTCAATGAAGTTATACCACAAGA 31983 29 100.0 35 ............................. TATCATAGGCCTAAAACAAAAGAAGAAGCTTTAAA 31919 29 100.0 36 ............................. CAGTTTGGAGAATAAAGGTAGAATGGCGGTATTATT 31854 29 100.0 37 ............................. CACATCTACGGTTAATAGCCCAACAATAACAGTCAAC 31788 29 100.0 37 ............................. AAAGAAATAAATTCTAAAGGTACTGTTAAAGTAGCAC 31722 29 100.0 36 ............................. GATTTACCCGTTCCAGTGTCCCCATCAATCAATAGA 31657 29 93.1 36 ......C.........A............ TTAAAGAAATAACATACATATTCAACTTCCTTATTA 31592 29 93.1 34 ......C..........T........... AGCACAAGGAACGCATGAAGAAGTGCTATGCATG 31529 29 96.6 36 ....................C........ GACACTAAGATTTTTCATAAGTGTTGTAGGTTCTTT 31464 29 93.1 35 A...........................C ACAATTTGGTGTCATGCATATGGCTATAAAAAATA 31400 29 96.6 36 ......C...................... TAGAATAAGATCTAATACCTTCCTCTTGCCTACAAT 31335 29 93.1 36 ......C.............G........ TTCCCTAAAACTACGATACTAGTTTCCTTGTCTTGT 31270 29 89.7 36 ......C.............G.......T TAGTATAATTTGTAGCAATAAGAAAATTATACTAAA 31205 29 93.1 36 ....A.C...................... TGAAAACACTAGGCTTTGCCTAGTTCACCAAAGCTT 31140 29 93.1 35 ......C..........T........... TGTTATGATAGAAGTAGTAGCAGATTAACATATTG 31076 29 86.2 36 ......C...........A......C..T GAAGTTTGGGAGATAGTTAAAAAAGCTGTTTTGTTA 31011 29 89.7 35 ......C...........A......C... GTAGCAGTTCTGTAAAGTGCTTATATAAATCTATC T [30983] 30946 29 93.1 37 ................AT........... ATTCAAGAAAGAGTGCAAAATTGAAATAATAATTATT 30880 29 89.7 35 ......C........A............T CAAATTATTGCTATATTACAAGCTTGGGTTTCTGC 30816 29 89.7 37 .C....C.........A............ TATACGTGTTCAGAAGATGTTAATTTAGCCTTGGCTG 30750 28 93.1 36 ......C....-................. CCGAACAAAACCACACTCTTCGTGCTAGGCATAAAG 30686 29 86.2 9 ......C..........T..G.......T CCGAGTTAG Deletion [30649] 30648 29 89.7 33 ......C....G......A.......... GGCTTTAATACTCAGAATATGAGTCTAATTTTT 30586 29 96.6 36 ............................T TATGAAGTAGTATGTTTTTTCGATAGAGACGGTAAT A [30575] 30520 29 96.6 37 .................T........... ATGTTATGTTGAATAAATCTGCGCTTGAAGACATTAA 30454 29 86.2 35 ......C..........GA......C... GTAGCAATTCTGCAAAGTGCTTAGATAAATCTATC T [30426] 30389 29 89.7 37 ................AT..........T ATCATAAAATGATCTCTTTTAAATAAAAAACTATCTG 30323 29 93.1 36 ......C............A......... GATGCTCCAAAGATAATATCTGTTGAGCAAGATAAA 30258 29 96.6 37 ............................T TGGATTTGGGGAATAGGTGCTGCAACATATGCTGGGG 30192 29 89.7 35 ..C...C.............C........ ATAAGTAAAGAGTATACATATAGGATATTAAAAGA 30128 29 89.7 36 .....GC..........T........... AGTGGAAAATCATGATTGATATTTATAACCCTAAAA 30063 29 93.1 36 ......C......G............... GTAAAATGCGTTAAGTCAACTTCAAGTAATACCAAA 29998 29 93.1 36 .C....C...................... ATACAATTTTGTATTTTTTTGTTAAAATGTGTACAG 29933 29 89.7 36 ......G.........A..T......... TGAAAACACTAGGCTTTGCCTAGTTCTCCAAAGCTT 29868 29 86.2 36 ......C...G..C...T........... ATCTTATTGTGGGTTTAAAATGGCTTAAATTCAACA 29803 29 93.1 35 ...C..C...................... GAAGAGGATATAAGGGGATACTTAGCAACAAAAGA 29739 29 100.0 36 ............................. GAGCGGAATTCGTTTAATTGGATTATAAATAATATA 29674 29 100.0 36 ............................. GACACGTTATTAACTGTATTAAATCTTTAATATTTG 29609 29 100.0 35 ............................. CTAGCTAAGTCTTGTATCAGCGTAGCAGGATACTT 29545 29 100.0 36 ............................. AAGAAGAAAGATGGAATTTATGCAATAGTAATGGAA 29480 29 93.1 35 .....GC...................... TAGCTCCTTGCAGTTTGTTTATACTCCTTTGCCAT 29416 29 93.1 36 ......C.............C........ GCAAAAGCATATTCAAATTCCTTGTAAGCGTCTAGG 29351 29 89.7 36 ......C..........T....C...... TATTATGCTAAAAAATATTAGAAGTAGAAAAAACAT 29286 29 93.1 36 ......C...............C...... AAGTAAACCCATCCTGCCCCGAAAAATAGTTCTACG 29221 29 93.1 37 ......C......A............... GAAAAGAGTAAGATGACTTGGAGTTTTGATAGAGTTG 29155 27 82.8 39 ..C...C..............G.....-- GGAGTGCTGCTACTTTTTCTATAGTCCACCCCTTCTTTA 29090 29 96.6 36 .................T........... TTATGGATAGAAATGTTGGTAGAAGCAATGCACAAT 29025 29 93.1 36 ......C........C............. TAGCTCTAATAATTTAAATCAGTAATAAGGTTTAAA 28960 29 89.7 36 ......C........C.T........... GTATTGAAAAAGAAGTAAACATACAAATAGGAGCAA T [28932] 28894 29 100.0 37 ............................. ACTGTAATTAAAATCAAACAACAATTAGACCCCAAAT 28828 29 89.7 36 ...C..C..........T........... GTAAGAATTGATGAAGCTAATAATTCTATACAAGAG 28763 29 93.1 36 .....GC...................... CAAAGAAAAAGAAAAGAAGCAGAGTAGTAATATCGG TAT [28744] 28695 29 89.7 36 ......C................GC.... AAAAAATCCGTTATCATACACTTCATTGTCTACATT 28630 29 82.8 36 ...A..C...........A.C.......T CATTTATCCAGACATAGCTTTGCTACACATAAGTTA 28565 29 93.1 37 ................AT........... AGTACTACAGAACTATCTTCCAATGGAACATTCAATC 28499 29 93.1 35 ......C.........T............ AATATAGAAATTATTTCTAACCATAAAGCCATAAA 28435 29 89.7 0 ..................A.....C..G. | ========== ====== ====== ====== ============================= ======================================= ================== 68 29 94.2 36 GTTTTATATTAACTATGAGGTATATAAAG # Left flank : TATTTTATAGAGGATGAACCATATAAGCCTCTTAAAGCGTGGTGGTAGAATATGTTTGTAATAATAACATATGATGTTGGAGAAAAGAGGGTCAATAGAGTAAGAAAAATATTAAAAAAATATTTAATTTGGACCCAAAATTCAGTTTTTGAGGGAGCAATAACAGAGGGAAAACTAAATAAATGTATGGCAGAAATAAATAAAATATCTAATAGAAATGAGGATTCAGTTTACATTTATAAAGTAAGTAATCCACATAATATAAAAAAAGATGTTTATGGTATAAATAGAAATTTAGATGACTTGTTTATATGAGTTGCAGTAAAGTGCATTTTATATAGACATTAATAAAATAAAGGAATATCAATACTTTACGGTAGTTTTTAATAAAAATAAAAAAACACTATTGCTACTTTACTGCAAAAAGGTATAATTTAGGTATCTAGGTTAGCCTTGTAGAATAAGTAATATCAGTGCTTTTACTGTTTTTTAAAAATGGG # Right flank : AGTGTTAGCAGTTGTTGTATTTTATAAACAACTGTACCAAATAATAATTAATAAATCTCCCAATAGTATTTCCTAAATATTTTATACAAACAATGTTTAGGAACATTCGCAATTTTGGAAATTTATTGGCAAAGGTGAGAAATTTGGAATTAATTTATCTTTGAAGCTACGGAGTAACTTTCTATAAAAAACTAGCATTTATAGTATCTCCACAGTATTAGTTAAATTTATTAGTGTTGTTCCAAACTATACTGCACCTCAGGGGAACCCTAAAGGGCTTCACTACTGTTCCCCAGAGGTGAAAAATTATCAATCGTAAAAAATTAAGAGTTAATAATTAAGAAGGAGTTAATAGAAGAAAAATAGAAATTACTTATAAAATAGAAAACTAGGAGGAAAATATGCCGAAATTAAATATTGAAGACTATAATATTCATTACGAAAGCTACGGAAGTGGGGAACCAATTATATTTTTATCTGGAATACTGATGAGTACAATA # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGTATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [51-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //