Array 1 459085-455089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFT010000007.1 Leuconostoc gelidum subsp. gelidum strain HS9 NODE_7_length_844720_cov_90.281464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 459084 36 100.0 30 .................................... TCAACAAGGAATCAACGCTCGATAATAGGT 459018 36 100.0 31 .................................... AATATTCCCATATGTTTTCTCCTTTACCATG 458951 36 100.0 30 .................................... TGCATTGCAGCACACTGCGCAGGATAACAA 458885 36 100.0 30 .................................... GATATATTTGTTAGCCCCCATTAAATCCGT 458819 36 100.0 30 .................................... TGTGACACGACCACAACCGTCACTAATCTT 458753 36 100.0 30 .................................... CACAAGCCAGTGCGGGAATTTTAGGGGTAT 458687 36 100.0 30 .................................... TCCATCTGGATTTACAACTACATTGCTACC 458621 36 100.0 30 .................................... AATAATCGAGTATAAATAGATAAACGCTTG 458555 36 100.0 30 .................................... TGGTAGGTTCGATTGGGTTGATATGGATAA 458489 36 100.0 30 .................................... ATTTACCAATATGATTGAACAGCCTGATGC 458423 36 100.0 30 .................................... CGAAAATAAAGCTAGTAAGCGGGCAGTTCG 458357 36 100.0 30 .................................... GTATTGTAAATTGATTGGCTTGAATACGTA 458291 36 100.0 30 .................................... CCCAAAAGAAAAACAAACGGAGTTATTGGC 458225 36 100.0 30 .................................... ACGTTTCTCGGTACTCGTTACGTTTATTTT 458159 36 100.0 30 .................................... CTCTCTATTACGATATATGATTCACCTTTA 458093 36 100.0 30 .................................... ATGAACATGTGACATTCAGAATAGAAGAGG 458027 36 100.0 30 .................................... TATAGGCTTCAATACGTTGGTAGGCACGGT 457961 36 100.0 30 .................................... AACAAATAAACATTGCAGGGTTAGGCATGC 457895 36 100.0 30 .................................... TAAGATTGTCAACACTACCGCCAACACATA 457829 36 100.0 30 .................................... CATATTTTATCGTGTCAGAATACATCCCCT 457763 36 100.0 30 .................................... TTATATACAAGGCTATACGACATAGATGAT 457697 36 100.0 30 .................................... CTTGAACTGAATCCCAACCATACTTCTTGA 457631 36 100.0 30 .................................... TAAAGTAGAAATGCATGATGTGTTTATTGA 457565 36 100.0 30 .................................... GAGCTTTTCATGACATCGCCAGACAATACG 457499 36 100.0 30 .................................... GGTAGATGCAGGTGTTTATCAATCCGTGGG 457433 36 100.0 30 .................................... CACCAAACGTTGGTATCAGTCAAAATTGTT 457367 36 100.0 30 .................................... ACTTAGTCCTTTTATCGTTTTCGTCCACCT 457301 36 100.0 30 .................................... TAATCTTTCTTGCGCTAATTCATATACGTT 457235 36 100.0 30 .................................... ACGAGAGGAACAGCTAATAGCAGTAATGGG 457169 36 100.0 30 .................................... GAGAAATATAAGGTCAATGATTACGACTAT 457103 36 100.0 30 .................................... AGCTCCGAATAATATATTTAACTCTTGCGA 457037 36 100.0 30 .................................... ATCTTGCAGGAACAAGTGGTGCTTGGGTTA 456971 36 100.0 30 .................................... AAAAAAATCATGTAGTTTATCTCTAATTGT 456905 36 100.0 30 .................................... TTTCGCTGATAGCTTGTTAATGAACACACT 456839 36 100.0 30 .................................... GGTATGGTCGGCTACTTGGAATGTCGTTAA 456773 36 100.0 30 .................................... GACGATGCACAAGATTGGATAGATGAGTTG 456707 36 100.0 30 .................................... ACCCAACTATCTTAAGTAGTCAGGTCATAA 456641 36 100.0 30 .................................... ATTAAGTCCATTATTTCAATAGCTCCTTTC 456575 36 100.0 30 .................................... CTTGTTATAGCCCGCGCCTGCTTCATAATC 456509 36 100.0 30 .................................... ACCAATCCATGATCTGACGAACATTTGGTC 456443 36 100.0 30 .................................... TGTTTGGTCTTGCAAGTCGCGCAATAATCC 456377 36 100.0 30 .................................... ATATAAATGCGGCGCGCACAAGAAGAGTAA 456311 36 100.0 30 .................................... ACTAGACGATGACTTTGTTCCAGCTGAATT 456245 36 100.0 30 .................................... GTTAGGATACATTTTAACCAAGTATCCTGT 456179 36 100.0 30 .................................... GCGATTTGAAAGATGTTGCCGTCAATCCGT 456113 36 100.0 30 .................................... CAGATAGGCGGCATTGCTAAACTATTTGTA 456047 36 100.0 30 .................................... ATTGAGGAGAAAAATAATGAACAAGAAATT 455981 36 100.0 30 .................................... GATAAGGTAGCTGCTAAGCAAGCAGAAGTC 455915 36 100.0 30 .................................... ACCGTCCATGTACGCCTTACTGTTAACAAA 455849 36 100.0 30 .................................... AATAATACTGAACACTATCGCCTGACTTAA 455783 36 100.0 30 .................................... GACCAATTGGTTTAACCGGTGCTACAGGAC 455717 36 100.0 30 .................................... GCGTTGTCTGAATGCCCTTGTCAACCCATT 455651 36 100.0 30 .................................... GGTCGATAAAACGATCGAAGAAGCGCTTGA 455585 36 100.0 30 .................................... AATAATTTTTTTAGTAATCCTGTCTGCTTG 455519 36 100.0 30 .................................... TTCAACAGCAGATCCGTAACCACGACGTTT 455453 36 100.0 30 .................................... TGTTCCGCGTTGGAATTACATTGGCGACGC 455387 36 100.0 30 .................................... GTTCATCTTGTTTAATACGTACTATTATTT 455321 36 100.0 30 .................................... ATCAGACTCAGGTAACAGATTATATACAGG 455255 36 100.0 30 .................................... TACACAATTTAATGCAAAGCCATTGCTCAG 455189 36 94.4 30 ...........................A.......T GTATCGGGAACAGGATATCAGATCTTGAAG 455123 35 77.8 0 .............AC..T..T...A..A..-...G. | ========== ====== ====== ====== ==================================== =============================== ================== 61 36 99.5 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : GGTGCGCAACTTGATGTGAATAAGTTGTATCAAAAAAATATCGTTAATACAATGAAAAATTATGCAGATGATCAAGCGTTAGAAGTGTTTTATAAAATAAATTCTGAATTAAATCATGTCTTAGAAAACATTATATTAGAGAATAATTTGCCCTTTTATTTTCAAACAGAATTCAATATTGTCGAATTAATAAATGAGAAAAAAATTAAGATAGAAACACTGACAAACAGCTCTGGATTTGGTAAAATAGAAGATGTAGTAAGCGTTGCTGGTGAGTTTTCAGAGCAACGTTTAATCGTTTTTACGAATTTGTATTTGTTGTTATCGGTTGATCAGATTGACTATCTGAATAATCTAGCGAAGACAATGAATTTATGTTTAATTTCTCTTAATTTGACACAAAACCCTGTTATGACTAAACAGGGTCTACCTCCAGAAATCTTTATTGATGAGGATTTCGTTCAATTTGGTGCTGACTAGCTGATGCGAACAGGCGGTCT # Right flank : GCTTAGGCGCTTTTTATATGCCATGTATGTCAAAAAAAGGTTTACGCGAATAACGATTATGGTATGATATATTATGTTATAAATAATCACGTCAAACGTGAGATGGAGAAAGGGAGATTTTCCTGTTTTGGTAAATAAAAAATTGCGAGTGAAAGAACTACTAGTTTCAACAATAATTATTGGTGGCGTTATGGGCACCATGTCTACGGTTAATGCTGCTGAAAATACAGCGCATGTATCGACACAAGTGCCAAGTACAATAACATCAGGTTCGAGTGGTACATCACAAGCGCCAAGCACTAAGACATCAAGTTCAACCATAAATGAGTCGAGACAAAATGATAATTATAATGTGACGCCGTCAACAAGGTCTATTCAAGTACATCAAGCGAAATTTAAAACCGGTTCTGTAATTGTATTGACCACTTCAGCAAAAACATCCAGTGGTACACAACTTCAAAAGTATGGTAATCAATCAGGTGTTGTGACGAATGTCATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //