Array 1 7635-7362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOR01000076.1 Nocardia sp. CY08 Scaffold67_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7634 29 100.0 32 ............................. ACCAACAACAGCAGACCTCCGGCCGGTTGCGG 7573 29 100.0 32 ............................. CGATCGGTCAGCTGTCGCGGTGGTCGCAGTAC 7512 29 96.6 32 ............................A CGGCTTCGGCTGCCGTCGCGTGGCGGTGGGCG 7451 29 96.6 32 .................A........... TACCGGCGCACGCACTCGAAGGCGATCCAGGT 7390 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : GTTCGAGCGATCGGTGGAACGGTCCGGGTCGCCACCGCAGGTATTTCCACTCGATCTCGCCACCCAGTGCGGCGAGCTGCTCGCGCAGGATCTGCTCGATGACGTTCTGCGGGATGTAGCCGCAGCCCGACAGAATCACGGGTCCGGACGGGGCTTGGCAGGGCTCATCTCGTTCCCTCCTGCGTATTGGACAAGGTCCGAACGAATTTCAGGCGTGTGCCCCATACGCGATGGTGGCACGACGATTGAACGCGCATAGCAGTCCGGCTGAGTCCACTTGACTCGCGGAATCCCGCTTGGGCGAGGGGACACTAATCGTCTGCTGGGGAGGTGCTGTGTCCAAGCACGATAGATGCGCTGGGGGCGACGACCAAGATCATCGAACGACAGGTCACCGTTCACACCGCACTTACACAGCACCACCACAACGCGACCAACCGACCCCGAACGAAGTGAACGAAAGGCGGGGTATCGTCACATAAATCCGCAGCTCAACAAGT # Right flank : CTGTAGGAGTCCAGCGGGATCCAACGTGGCACAATACGTGATTCGCTCGTGCCCGGCGTGGTTGCTGGTCAGCCATCGCTACTTGTCATCAAAAGCGCCATTTAATGACTGACGTCAACCAACGAGGCTCGCACCCGCCAACGCCAGCAATCGATGCTACAGCGGGAGTGGGTGGGTGTTGGAAGTATCCGCAGCTGAGCGGCCCAATGCAACCAACTGACTCCAACGCGGTCCGCTCTTGACAACGATGCCAATCGCAAGTTAGTTCGATGCGAGTACATGGAGTTACCTATGTACTCACGAAGCGCGCGGTTCATCAATGATAGTGACTCACCTCACAGTGCCTACGCGCGGGTAGATGACCTGCCGCGTAGGCTCCAGGCCATGCCTCAGACGACGGCGACACCGACCAAGACGACGGCAACGGCCAGGGATGGAAACGGGCTCATGAACACCTACGCATTGCGCCCCGATCGGTTCGACCGAGCAGGCCAGGACCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3955-4572 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOR01000083.1 Nocardia sp. CY08 Scaffold73_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3955 37 100.0 35 ..................................... ACCGACTGGTCGAGCTCCTCGCGGGCGACCATCTC 4027 37 100.0 35 ..................................... ACCACCACCGAGGACGTGCTCAGCCAGCTGACGAG 4099 37 100.0 36 ..................................... GAGCCCCACCTGGACTTGCTGGACCGCATCAACGAC 4172 37 97.3 37 .................C................... TACGGCTCCCATGGCCCCACCTCCGAGATCGCCAGGG 4246 37 97.3 35 .................A................... ATTTCCGGGCACCGCGCGGTGCTGGTGCGCAGCGT 4318 37 94.6 35 ................TA................... CCGACCGGGCCGGGTCAGATCTGCGGGAACGTGGT 4390 37 97.3 35 ..........T.......................... ATCTGCCGTCGGGTCATGTTTCCGCCGCTGAACAC 4462 37 83.8 37 .........AA...T.....T.A...T.......... CACTTCGATGAAATGGACAACGCGCACCCTTCGATGC 4536 37 89.2 0 ...........T........T.AT............. | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 95.5 36 GTGGCGGTCGCCCTCACGGGCGGCCGAGGATCGCAAC # Left flank : GTGGCATCGGACACTTCAGCGCCCCCCTGGCCACCCGCACCGGTGTCACCACCGACGACCTCGCCCTGCTCTGGCGCTGCATGACCCTGATGTTCGAACATGACCGCGCCTCCACCCGAGGCGAAATGGCCCTGCGTGGCCTCTACATCTTCACCCACCACGACGCCTACGGAACCGCACCCGCCCACACCCTCACCGACACCGTCCACATCACCCCCGACACCCGCCAAACCCCGACAACCCCCATCCGCAACTTTACCGACTACACCATCACCATCGACGAAGCCGCCATCCCCGACGGCGTCACACTCACCAGAATCGTCAGATAGCCCTGGCTACCCGCCGATGAACACACCGCAGGCGTTCCCACACTTAAGAACCCCCAGTGCACACGGATTCCCAAGGAGGTTCCGAACTGACGAACAGCAGTTATGGAAACCGAGGCGCCCCAAACAGACTCCGTCGCGGGGCCCGGTCGACGTTCGCCCAGTTCGCGCACC # Right flank : GTCGGCGACTGTCGCGTCCGGCTGAATACTGACCCTCTGGTTCCGGGTGAATGTTGACCCACCCGTGAACGATCATGAGGTGCTGAACGTGGAGGACTGGGCGGAGATCCGCCGGTTGCATCGCTCGGAGGGGATG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCACGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.90,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //