Array 1 237164-235634 **** Predicted by CRISPRDetect 2.4 *** >NC_009053.1 Actinobacillus pleuropneumoniae serovar 5b str. L20, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 237163 28 100.0 32 ............................ TCGTCTTGCGTGATTTGAGTGCGCTGAGAACG 237103 28 100.0 32 ............................ GCGATAACGAGCCTCACCAATAAAAACCTGAA 237043 28 100.0 32 ............................ TCATTTTGTGATTGGCGAGAAATTTATCAAAA 236983 28 100.0 32 ............................ TGATGAAATTGATAAAAGTTACCAGTCAATGG 236923 28 100.0 32 ............................ TTGTAGCGAATTGAATTTAAAAGCTGTTTAGT 236863 28 100.0 32 ............................ AGTTACAACTGTAATCAATGCTCGTTTTTCGT 236803 28 100.0 32 ............................ TCCTGAAAAAGCAAGCGGAAAAGCCAAAGGTA 236743 28 100.0 32 ............................ TCCAAGTGAGCCAGCTACAACTAAGCCAAAAT 236683 28 100.0 32 ............................ AAGTAGTTCTTGGCGTGCTTTAACGATTAAAT 236623 28 100.0 32 ............................ TGAAAAAACCTACCAACAAGCAACAGTTACAG 236563 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 236503 28 100.0 32 ............................ TAGCGGGTGCAATCCACATTGCAGAAATCAAG 236443 28 100.0 33 ............................ TATTTAAAATAGTCTGATGTTGAATCTTCCGAT G [236424] 236381 28 100.0 32 ............................ AGCAGAAAGCTCACACGGAATGTGGAATTTTT 236321 28 100.0 32 ............................ TTTGGGTTTCGAGGGTATGACATTATTTTTTC 236261 28 100.0 32 ............................ TCTATGCCGCAAGTGCGGCGTATTCTACTCTT 236201 28 100.0 32 ............................ GTGTAAAATCCCATGACGTAAGCGAACCGCTT 236141 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 236081 28 100.0 33 ............................ AACAAGCACGTATTAAAAGCGATTTTATCAAAT 236020 28 100.0 32 ............................ ATTCGCCCCGACGATAAATTTCTAACTGCTCC 235960 28 100.0 32 ............................ AAATTGTTGTAAAGACTCAACCTGATTACGCT 235900 28 100.0 32 ............................ ATTTAAAGGAGCGGAAGATACCTTGTGTAAAG 235840 28 100.0 32 ............................ GCCCGAACAAGATTCAATACTCTATTGATACC 235780 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 235720 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 235660 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.5 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTGCCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGCCAAAGTGCTATTCGCCGTACAGAGAAATTTTTAACTCAACAAGGGAAATGGACCGAAGATGTTCGCAAAGAGATGCTAATACATCAACAGAATCAAAAAACATTTCCCCATGTAAAACTCAAGAGCAGTAGTACTAAGCAGCATTTTGTATTAGCAATACGACAATTTCGTTTAGCAGAACCCGCTTCAGGCTTATTTAACGCATATGGATTAAGCCAAGTAGCAACCGTTCCGCATTTCTAACCCATTTTATAACCCTTTTTTCAAGAGAATTCATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATCTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTGTCAAAAGCAGGGGTTATGGTCGGTTTTTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGCCCCGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //