Array 1 58095-57812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKXY010000005.1 Natronolimnobius sp. AArcel1 Aarcel1_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================================ ================== 58094 40 100.0 38 ........................................ CTATCGGTCGGCGGGCTGGTCGGCGACAACTTTGGCGG 58016 40 90.0 44 ...G.................T..T............T.. GTCCATGTTGGCGGGCTGGTCGGCTGGAACAGTGATGAAGGCAC 57932 40 100.0 41 ........................................ GGAAACAATGTCGGCGGGCTGGTCGGCTTCAACCGGGGCAC 57851 39 87.5 0 .C.....-....C........T......A........... | G [57848] ========== ====== ====== ====== ======================================== ============================================ ================== 4 40 94.4 41 AGTCAGCGAGTCGTACGCCACCGGGACTGTCACAGGAGAC # Left flank : AATACTGGCCCCGGAGGGGCAATGAGAGTCCTTTGGTTAGGGGCGATGGTTTTTATCATCGCAGCAAGCGTTTTCGCTGTCGGAATTGTGGGAGCGGTAGCGGCCGATTCGGTCGACCTCGATCCCGATACTGATCTGGACGGTGAGGGTGTCGACGGTGATCCCTACATCATCACGAACGCCTCGGAGTTGCAGGCGATGAGTGGTAATCTGAGTGCACACTACGAACTCGGGAACGATATTGATTCGAGCGATACCGAGAACTGGAACGATGGGGATGGCTTCGACCCGATTGGAGATGATATAGACAGATTCACAGGAGCGTTCGACGGTGACGAGCACACCATTTCGCATCTCATCATCAACCGCAGTGGCGAGAACCATGTGGGCCTGTTTGGTGGGACTGACGAAGACGCGAGCATCGAGAACGTCGGACTAGAAGATGTCGACATCCACGGTAACAATGATGTCGGCGGATTGGTCGGCGACAACGACGGCAC # Right flank : GATGATATCGGTGGGCTGGTCGGCTTCAACCTCGACGACTTCAACGGAACAGTCGAGAAATCATACTGGGACACCGAACGAAGTGGGTTGAGCGGTGATAACGACGGCATCGGTAATGGCGATCATGATGTCGACGAGGTCAACGGCCTTAGCACCCAAGAGATGCAGGGTAGGTGGGCCTATGACGGCAGCAATGGCAACATGACTGAGCCAGGCGACGGCCTCGACTTCGACGACACCTGGACTACCGTCGTCGGTGACTACCCAGACCTGCAGAACAACGCCCGCACGACGTCGACACCGCACTTCACGGAACCAGACGATGCTGAAAAAGAGCGGCTTCTCGAGGAGATGGAGACGGACGGGGATGTCAAACTCGTCACCAGCGACAAGGTGTTGCAGGCAATTGGCCTCGATAGTGGCTCGCTGGCTGATGACTACCGACTCGCGCTTACTATCGATGCCTCTGGGACTGAGAAGTGGGATGGCGAGGATGGCTT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCAGCGAGTCGTACGCCACCGGGACTGTCACAGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 34-722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKXY010000014.1 Natronolimnobius sp. AArcel1 Aarcel1_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 34 37 100.0 34 ..................................... CGTCAGTGTAGTGTTCGTCAAACCCCGCGCCACT 105 37 100.0 35 ..................................... AGATCGTGCCATCCGCGCCGTAGTGGCGAACCTCC 177 37 100.0 36 ..................................... CGGGCGGTCTCTCGACGGGATTGGTCAAAGCGATCG 250 37 100.0 34 ..................................... TCGGGTGAGTTCTACTTATCTACGAAGGAGACGA 321 37 100.0 35 ..................................... CTCGCTTGCTGGAACGTCGAACGCGTAGGTGCCGT 393 37 100.0 36 ..................................... AGATCGAAACGCTCGACGAGGACCTCGATGGAGAGG 466 37 100.0 34 ..................................... AAGACGGGTTTACCTTTCCCGGTGTACCGGCTGA 537 37 100.0 38 ..................................... AGCAGCGAGCCGATGCTGTGCTCGAGCGCGTTCGCGAG 612 37 91.9 37 ...........C.......T..A.............. TCGACCGTGCCGACCATTTCGCTTCGATCATCAACGG 686 37 89.2 0 ..................A....A...AA........ | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.1 36 GTTGCAACCGATAGAAAACCCAGGACGGGATTGAAAC # Left flank : GCATACCTACGTGCGATGAAATCGCAACATCAGG # Right flank : CGATTAGCATTCTATACCGTTCTTGACGCTCTCAAACCCGACACAAATAACTGTTACGTGCGATGTAAACCGTTATATCAGGCATGACGGTAGAGATAGAAGTACGGTTACCGCTACCGGACGGACAAATATTCAGGTATGAGGCAATGGACGACATCCTCGAAATTCTTGCCCAGAATCCGCCAACTGAATTTGGGAACAGGAACCTCCAAGAACTCACCGGATTCGGTGGTCCCAGCGTTTCAAAGGGGCTTTCGCTGCTCGAGTCGGTAATTCGAGTTCTTTCGGGATACGAGGTCGTCTCGATTTGTTGTAGATTCCTTGTTTGAGTGAAGACTGCGCACACACCATCGATTCAAACGTTTCTTTGACTTCTAGTGATCCGAACAGCAACCGCTCCACGTTTTTGTGTGCCTGAAAGGCCTGAGGCACAAATTCGAGTGCCTCGAGATTCCTGATGAGTACGGATCAATCGACACAGAGCGAGACGCATCGAGAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGATAGAAAACCCAGGACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 560-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKXY010000012.1 Natronolimnobius sp. AArcel1 Aarcel1_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 559 37 100.0 34 ..................................... AATCGGAAAGAGAAACAGCGACGGAGGGGGTACT 488 37 100.0 36 ..................................... TTGTAGCGCCGTGGGATTTTAGCGGGATAATACAGA 415 37 100.0 36 ..................................... CGATCCGCACAGTCATTAATAGTGGCTGACCGGAGC 342 37 100.0 39 ..................................... CCTACCCTCACACGGATACTGTTCAGGAGGAACCATGAG 266 37 100.0 37 ..................................... CTACGTCCGCCTCTGAATGGCAAGAAGTAGACGATCT 192 37 100.0 35 ..................................... AAGGTTTGCCCTGAGTGTGGCCATGCACCGCGAAA 120 37 100.0 38 ..................................... ACGACGACGCTGACGAGGACTACGGCACAGTCCTAAAG 45 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 37 GTTGCAACAGACCGAAAACCCAGTACGGGATTGAAAC # Left flank : CGCAATCGTCTCGCTTGGTGGAGGTCCACGGGATGTGCTACTTCCGCTGACAGTCGCAGCACTCGTCTTGTCACAAACGGTCGACAACGCGTTGTTCTTCAGCGACATCGATAATACAGTTCAGGAATGGCCACTACCAGACCTGACTGCAGGGGTTCCGAGTCGAACGACAGACACATTCGAGACCATCGTCACGGCTGGCGACTGGCTTTCACTGTCTACAATTGCGGACGAAACGGGTCAGTCGAAGAGTACCGTTATTCGGCACGTGAATGACCTCGAGGACGCAGGTCTCATTGAGTCGGATACGAGTGCAAAGGCCAAACGAATTCGTATTGCCTTCTCCGGAGAGTTGCTGTCGTTGGCTCGAACTAGCAGTCCCTAATCCCAGCTTCATCGACCCTCTTAAAGGCGCTGTACAGCCCCCTTTCACGAAGTTGGGTGCAACTCTCATGGCTGGAGAAACAATTATTTGCTTGCTCCCGCTATCTCAACCCCCT # Right flank : CTCTTCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGACCGAAAACCCAGTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 11359-12190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKXY010000012.1 Natronolimnobius sp. AArcel1 Aarcel1_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11359 37 100.0 37 ..................................... TCGACGACGAGTAACCGATTGTCATCTCGAATGTCGG 11433 37 100.0 32 ..................................... TTGATGCTCCCAGCCAGTCCGTCTGGCATCGG 11502 37 100.0 34 ..................................... ACGGTCTCGCCTGTTGGTGGGACAGTCACGTCTC 11573 37 100.0 36 ..................................... CTCATCCCGCACGCTCGAGACGGCCACAACGTCTTT 11646 37 100.0 36 ..................................... TTATAGAGACATTGGACAGTACGACAACGACCTCTT 11719 37 100.0 34 ..................................... TTGGCTTGGTCACGGTCCATCACGGCCTTCCGCT 11790 37 100.0 35 ..................................... TTCCGCTCGCCGTTGGCCTTCGCATCCTCATACAG 11862 37 100.0 37 ..................................... ATCCTGAACGGATCCGGCTGGCTCGCGAGAAATACGT 11936 37 100.0 35 ..................................... TTGACGTGGCTTCCACCCAGACGCTATCAAATCTT 12008 37 100.0 37 ..................................... AGTACACGCGCTACGAAATCCATAACACTGGAGAACC 12082 37 100.0 35 ..................................... GGTGGCAAGCGCGGTCGTGGACAGTCTGGCAACGA 12154 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCAACCGATAGAAAACCCAGGACGGGATTGAAAC # Left flank : CGACGGAAGGCCATCCGGCAACAATCAATCCTTCTCCGGAAGGCAATTACAGGAGAAATGGACGAGTATCACGCACTTACGTTTGACAGATAACGATGCGTCTCGCAATCACCTATGACGTTAGTAAGGACTCGAATCGGCGACGAGTGTACCGGACGCTCGAGCGCTACGGTGCCTGGAAACAGTACAGCGTATTCGAACTGGAGATTTCGAAGACCGATCGTGTTGAGTTAGAAGACGAACTTGAATCGCACATTGAGCCGTCCGACGGTGATCGAATTCGGATCTACCGACTTTGTGAATCGTGTGTCGACGCGATCGAGGATATTGGCGATTCACAGCCCAGTGAGCAGTCGAACGTTATTTGACCTACTTGGTTTCGTGCGGCTGTTTTCATCAATCCTTATAAATGACGTGTACAGCAGTAGTCGACGAACGTAGCAGCAGTATTCAGGGCACAAGAAACGTTTATTAGCTCTATAGCCGTATATCAACCCCCT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGATAGAAAACCCAGGACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 4-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKXY010000016.1 Natronolimnobius sp. AArcel1 Aarcel1_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 35 ..................................... TGAGATAGACATGGCTGATTAGTGACCCACCTCAG 76 37 100.0 38 ..................................... CTCGCGATGCTATTCGTCGTAATCGGTATCCTGCTCGT 151 37 100.0 32 ..................................... TGGTCAGTCGCCCCCGACAGTAACTCGAGAGC 220 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 35 GTTGCAACAGACCGAAAACCCAGTACGGGATTGAAAC # Left flank : AGCG # Right flank : CCTGAACCCGTTCAACTGACAGACTATGAAACGCATGTTGGCTCTGGTGAATCGCCATACTGCGTCGAGTTTCGGTTGTTGAGAGTGCGTTGCAACTTCCCTTGACAAAAGCCAATCGAGGTGGTTGGGGAGATAGCTACCGCTAAGAACGATCAGAAGAAAATTTTCGCCACGATCGCCCGGCGATCAAGCCCCCAATTCGGACGCCGTCTAGTGATTCACCAGAACCCGCATGTTGCAACAGACCGAAAACCCAGTACGGGATTGAAACCCGACCAGGAGGACGTCGACGACGATCTCGAGAACCGTTGCAACAGACAGAAAATCCAGTATGGGATTGAAACCATCGGTCCGTATTCCCTCCGTTCTCGGACGGCGTGTTGCAACAGACAGAAAACCCAGTACGGGATTGAAAAATTGCAGATAATACAGGCTATTCACGCGGTCATGTCCGTCGCAGCAGAGAGAAAACCCAGCACAGGATTGAAACTCGATATGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGACCGAAAACCCAGTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //