Array 1 54688-54388 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGV01000003.1 Aggregatibacter actinomycetemcomitans strain 310a scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 54687 32 100.0 35 ................................ CAAAACAGTGATTTAGGTGCCGGTGTTAATGCAGC 54620 32 100.0 34 ................................ CGAAGACGCAGTGGAATCTCGTCGTTTTGAGCGT 54554 32 100.0 36 ................................ AAATAACCGAAACCCTTTCTAAAGCAACCTCTTTGG 54486 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 54419 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 137170-139659 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGV01000003.1 Aggregatibacter actinomycetemcomitans strain 310a scaffold3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137170 28 100.0 32 ............................ ATACCAAAGTTCGGGTGTAACTACACTCCGAA 137230 28 100.0 32 ............................ AAGTTCAAAGGGCGAGAAAGTCGATTATTCCC 137290 28 100.0 32 ............................ AGAAGGTGAAAATTCAGCGTAGGTATCACTAA 137350 28 100.0 32 ............................ ACACTTATTTGTTGCGTCGTCTCAGTCAGCGT 137410 28 100.0 32 ............................ ACGATATTTAAACGTGAGATAAGTCCTTCTTC 137470 28 100.0 32 ............................ TATTTCTCGATTCCGGTAGCGTTCAACAATAA 137530 28 100.0 32 ............................ ACATATACCACTCATTAATCCCAATGCCGCAA 137590 28 100.0 32 ............................ TCATCAACGTGCTCCGCCCCAAACAGATCTTT 137650 28 100.0 32 ............................ ATATTTTAGTAATGTGCGTTTATGATACTTCA 137710 28 100.0 32 ............................ ATACATAACAATTTAATTTCTAATAAATTGTT 137770 28 100.0 32 ............................ ATATTATTTAAAGCATCTAGTATAATGTCTGC 137830 28 100.0 32 ............................ TACCTCTTCACTTCAAGATTGCAAAATTGCCC 137890 28 100.0 32 ............................ TTTTTATTTAAACATGTTTATATTTTATGTTA 137950 28 100.0 32 ............................ ATTATCAAAATTATTACTACCTATTTTCAGTT 138010 28 100.0 32 ............................ ATACTATCCTATTAATCATCATAAATAATGCA 138070 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 138130 28 100.0 32 ............................ TTTGATAAAAGATTCAATTACTGATCGGGGCA 138190 28 100.0 32 ............................ AATTACCATGAAATAAGTCGACAAATTTTTCA 138250 28 100.0 32 ............................ ACGAGCCATAGCTTCTTTCCCAATGCCTGTTA 138310 28 100.0 32 ............................ TCACACCTACCTTATGAAAGCTCATAGAATGC 138370 28 100.0 32 ............................ AATGCCTGTTAAACCCAACAAAACAAAGTAAT 138430 28 100.0 32 ............................ TTCTGCGCATTTAGTGACAATTATCAATCATG 138490 28 100.0 32 ............................ CACGATTTTTACCCGAATTTTGTGTCCTTTTA 138550 28 100.0 32 ............................ TTCATCGAATGAGCTATTCATTTTATAGTCAC 138610 28 100.0 33 ............................ TAATAGGTCACGAATGTCGAAGAAAATTATGGT 138671 28 100.0 32 ............................ AGCTTTAGAAGGTAAGAAAGTTTATACTGAAA 138731 28 100.0 32 ............................ ATTTAAACACACCTTTTAGATTAAAATAGTGT 138791 28 100.0 32 ............................ CACGATTCTGACCCGAATTTTGTGTCCTTTTA 138851 28 100.0 32 ............................ TTCTATCTATTGGTGCCTGTCCATGGCAAATT 138911 28 100.0 32 ............................ TACACTAAATACCATATAATTTTTTCCGCCAA 138971 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTTAATTACAG 139031 28 100.0 32 ............................ ATATTGCAATTTGCTCACCTTGAATACTTAAT 139091 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 139151 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 139212 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 139272 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 139332 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 139392 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 139452 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 139512 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 139572 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 139632 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGARAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //