Array 1 29665-27889 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLU01000033.1 Salmonella enterica subsp. enterica serovar Infantis strain 231 NODE_33_length_52990_cov_2.59094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29664 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 29603 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 29542 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 29481 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 29419 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 29358 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 29297 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 29236 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 29175 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 29114 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 29053 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 28992 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 28931 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 28870 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 28809 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 28748 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 28687 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 28626 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 28568 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 28507 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 28446 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 28385 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 28324 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 28263 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 28202 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 28141 29 100.0 11 ............................. CGGCCAGCCAT Deletion [28102] 28101 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 28040 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 27979 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27918 29 93.1 0 A...........T................ | A [27891] ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47563-45947 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLU01000033.1 Salmonella enterica subsp. enterica serovar Infantis strain 231 NODE_33_length_52990_cov_2.59094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47562 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 47500 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 47439 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 47378 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 47317 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 47256 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 47195 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 47134 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 47073 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 47012 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 46951 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 46890 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 46829 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 46768 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 46707 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 46646 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 46585 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 46524 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 46462 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 46401 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 46340 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 46279 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 46218 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 46157 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 46096 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 46035 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 45974 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //