Array 1 52976-51686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CUSX01000005.1 Campylobacter coli strain OXC6559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52975 36 91.7 30 .GG...............T................. TGCCTTTAAAAGCTCGCAAGATGCTATGAA 52909 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 52843 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 52777 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 52711 36 100.0 30 .................................... TATAATAAAACCGCCTGTAATGCTGTTAAA 52645 36 100.0 30 .................................... TGATTTTTACGAGTTAAAAAATATTATAGA 52579 36 100.0 30 .................................... TGCAGGTAATTATAATATTGCATTTAACGA 52513 36 100.0 30 .................................... AAAATATTTAAGTATCAATGGAGTAGATTT 52447 36 100.0 30 .................................... TATTTCACAACTTATATCTATAGACTTAAA 52381 36 100.0 30 .................................... AAAATATTTTGGATGAGTTGAAAGAAAGCT 52315 36 100.0 30 .................................... AGATTTTTCATTTAAATGATGATGAGTTAA 52249 36 100.0 30 .................................... ACTTTCTCGCAATATGGTAAAGTAGTTGTA 52183 36 100.0 30 .................................... TGTCTTGAATTAACATCAAATCATTTCCAT 52117 36 100.0 30 .................................... AGTAGTGTTATCAATAATGCAAACGCAAAT 52051 36 100.0 30 .................................... AATTGCTAGTCAATTAGGTTTAGATGACGC 51985 36 100.0 30 .................................... AGAAACTATATTAGCAGGTATAAATAACCT 51919 36 100.0 30 .................................... AACTAAATCACTATAAATATAATCGCTTTG 51853 36 100.0 30 .................................... TCCATTCTCATAAAATATTTAGCCATTATT 51787 36 100.0 30 .................................... CCTAACATACTAGCATTAGTATCTCGTGCG 51721 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAACAAAGCCGCACTGATGATAGCGCCAAAAGAATGTGAAATCTTAGAAAATGAAAGCTTGGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //