Array 1 2871223-2869483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038595.1 Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2871222 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 2871161 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 2871100 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 2871039 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 2870978 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 2870917 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 2870856 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 2870795 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 2870734 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 2870673 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 2870612 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 2870551 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 2870490 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 2870429 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 2870368 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 2870307 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 2870246 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 2870185 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 2870123 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 2870061 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 2870000 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2869939 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2869878 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 2869817 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 2869756 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 2869695 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 2869634 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 2869573 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 2869512 29 100.0 0 ............................. | A [2869485] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2889761-2887903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038595.1 Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2889760 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 2889699 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 2889638 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 2889577 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 2889516 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 2889455 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 2889394 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 2889333 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 2889272 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 2889211 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 2889150 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2889089 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2889028 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 2888967 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 2888906 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 2888845 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 2888784 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 2888723 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2888662 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2888601 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2888540 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2888479 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2888418 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2888357 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2888296 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2888235 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2888174 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2888113 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2888052 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2887991 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2887930 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //