Array 1 594382-589509 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKW01000001.1 Bifidobacterium asteroides strain VRA_9sq_n contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 594381 28 100.0 33 ............................ TCACTGCCGCTGATTGAGGGTGCCGCTGGTGTC 594320 28 100.0 33 ............................ CTTAACACTTATAACAATACTACTGCCAAGTAT 594259 28 100.0 33 ............................ GTTGCCGATGCTGTTACAACAGCAGCAGCTAAT 594198 28 100.0 33 ............................ TCCAGGTGGCGGTGTTGCCAGTGTCGCCGGTGG 594137 28 100.0 33 ............................ TTCCGTTGACGACGCTCCAGAAGCCGCTCGCCT 594076 28 100.0 33 ............................ CAATTTTGACATGGACGATCCAACAAGGTATAC 594015 28 100.0 33 ............................ TCAATCAAACGTAAGGGAAGAAAATGAGTGAAT 593954 28 100.0 33 ............................ CTTAACCAATATCTGATCCAAACTAAGCAACTT 593893 28 100.0 33 ............................ CTCTGCCGCAATTGTCACATTTACTCTCAGCCA 593832 28 100.0 33 ............................ TTTTTCCTACTCACTGCTAGGGGCCGTGTGATA 593771 28 100.0 33 ............................ TCAGTCATTGCGAAAGACCATGCAAGACATGCT 593710 28 100.0 33 ............................ TTATTTTCAACTTGTGAGGCAAGTGTTGGGGCG 593649 28 96.4 33 .C.......................... CCCATTGATGATCTGGCTACCAGTATCGTAGAG 593588 28 100.0 33 ............................ TCATGGGTAAAGTCTGGGTAGCCAAGAGGAAAG 593527 28 100.0 33 ............................ TAGATGTTAGGTCGGATCGGATGTACATGATGA 593466 28 100.0 33 ............................ GTTGATTGACATACATTCCGGCGATACGATTGA 593405 28 100.0 33 ............................ TGACCTGACGCATGACAACAACAAGGCCGTGCT 593344 28 100.0 33 ............................ TTTGTCCGAACCTGGATTGTCGTCCAGCCACCA 593283 28 100.0 33 ............................ CAAACGGCGAAAGGGAGATTGCCTCCTTGTGAT 593222 28 100.0 33 ............................ TTTGCCAGCCATTTATCGAGTCGCCCCCTCTAC 593161 28 100.0 33 ............................ CGAAAGTCAGCTACGGTATGCATTCACGGAGGA 593100 28 100.0 33 ............................ CGGTGCATATGGGTTGGTCTGAGGTCAGTTTTA 593039 28 100.0 33 ............................ TGATTCAACAATTTCTGGAACTTCTGATAAGAC 592978 28 100.0 33 ............................ TGTCTTCATCGATTTGGTTATCAATCGAAAATT 592917 28 100.0 33 ............................ CGTCACATCCAGCGTCACCGTAGGAGTGGAGAT 592856 28 100.0 46 ............................ TCTGTTCTACTAATGCCTGTAAGTCATACGTGGATAGCCTAAATAA 592782 28 100.0 33 ............................ TGTGACACTTAGTGTGGTGACGACATGCAGACC 592721 28 100.0 33 ............................ CATGTTCGAGTTCGATCATTCTGCAGCTAGAGG 592660 28 100.0 33 ............................ TGGCAGTCCGGTCCACACCCGTCTGGTGAGCAT 592599 28 100.0 33 ............................ CAGCATGCCATGCGGGCCTCCGGCTGCCGAGTC 592538 28 100.0 32 ............................ GCATTCCCAGTCAGCCCGAAAGGAACCGAAAC 592478 28 100.0 33 ............................ GGACCAAGGGGACTCGGCCCACGCTCCCCGACC 592417 28 100.0 33 ............................ CTTGAATCTTGTTTTATGGGAATTTGGGGGACG 592356 28 100.0 33 ............................ CCGCCACGCCACATGACCACATCCCCTGCCTCC 592295 28 96.4 33 ....................A....... CACTTCCTATCAGGGGTGCTACAACGCCCAGAC 592234 28 100.0 34 ............................ TGCAACATGTCCATCTGCTTTTGTGAGCGGGTGG 592172 28 100.0 34 ............................ CTGGGTGGTAGAGATGAGTATCATCATCCGGTAT 592110 28 100.0 33 ............................ CCGTTGGCCGACCAAAAATGCAGATAGGCGTTG 592049 28 100.0 33 ............................ TGCCGAGACTAAATGAGTTGGTGAGGTTTTGGT 591988 28 100.0 33 ............................ CTGCATGCCTAGCTGGGAGATACCTGAATTTTC 591927 28 100.0 33 ............................ CACCGCGCTCATGCTCTCCGGCGGCAGCACGCA 591866 28 100.0 33 ............................ GGCACACATTGAAGTATTTCACAAGTGATTTGC 591805 28 100.0 33 ............................ CGTATGGATGTCAGAACGAGCAGCCTTCAAGGC 591744 28 100.0 33 ............................ GCAGTCACCCACTATGAAGAATCGGATGATGGG 591683 28 100.0 33 ............................ GCTCGATACAGCTCAGGCCGTATCCAAGGCACT 591622 28 100.0 33 ............................ TCCGCCAAAACGACCCCGGCAGATCAGCATAGA 591561 28 100.0 33 ............................ CAAGTACTTGGACAGGACTGACGGCGATAAGCT 591500 28 100.0 33 ............................ TAGGCCGCTTATCTGCTGAAAGGTGGTGTGCCA 591439 28 100.0 33 ............................ CCAAATGCCCGATCTGCGAGGACCTGCCACGAG 591378 28 100.0 33 ............................ CTTCGTTCCTTTGTCTTTCTGCCGGCTCATATC 591317 28 100.0 33 ............................ CCCCGGGTACGGGGTGTCCCCGTCCGCCGACTA 591256 28 100.0 33 ............................ TATTTTCTGTCTCTCCGCGAATCTCAAAATAAG 591195 28 100.0 33 ............................ TTTTTGAATGCGATCCGCAATCAAGCCGGGCGC 591134 28 100.0 33 ............................ TGACTCAAAAATTGATAAGGCGAATGCGGAACA 591073 28 100.0 33 ............................ TTCCGGTCCCTCCATGTCCAAATCCAGATTATC 591012 28 100.0 33 ............................ GTCCTTGTAATGACGACGGATGGACTTTTCAGC 590951 28 100.0 33 ............................ CATTCGCATCGTTTGCTGTATACAATTCATTTC 590890 28 100.0 33 ............................ CCTTTTTAATGGTTCTGCCTTCCATCAGCTTGC 590829 28 100.0 33 ............................ TATGGCGTATGAAAATCTGCCGAAAATCATTCT 590768 28 100.0 33 ............................ GGACGGCAGATGCGCACAACACCAGAGGCCGGC 590707 28 96.4 33 ..........................T. TCCTGAACAGTCTGTGTATCCTGTACTTTCCGG 590646 28 100.0 34 ............................ CTGGCGAGGAAAGGGGAAACCATGGATACCGGTA 590584 28 100.0 33 ............................ TTATGGTCGTTCAACTTTAGTTCATTCGCGGCA 590523 28 100.0 33 ............................ CCGCTGTCCGCAATGCACACAGTAATGTGGTTC 590462 28 96.4 33 .....T...................... GTCCATGAAGGCCTTGACGGCTGCCACGCCCAC 590401 28 100.0 33 ............................ AAGGTCAGCAGATAAAGCCGTTTGGCGGAAAGA 590340 28 100.0 33 ............................ TCGTTACGAAAATTCTGCATGGCATACGATCCA 590279 28 100.0 33 ............................ GCCGTCCTCGAAGGTGTCGATCTTGCCGGATGC 590218 28 100.0 33 ............................ CGGTCTGGGCCCATTGCTCGAAGGTCTGTCCCG 590157 28 100.0 33 ............................ GCTCGACCAACTGCATATCACTGTCGAGGAGGT 590096 28 100.0 33 ............................ CAGTGGTGCGCGTGGCGAGGTGATGCGCCAATA 590035 28 100.0 33 ............................ TACGGGGCGACCACTGCGGGTCTTATCAACACG 589974 28 100.0 33 ............................ CCCAAGGATGGCGACGACCATCTTATGGATGCT 589913 28 100.0 33 ............................ CAATCTCCCTGTGCAACGTCACATGGGACGCTT 589852 28 96.4 33 ..........................T. GTGATTCCACTTGAACCGGTTAGCCACCTGGTT 589791 28 96.4 33 ............C............... TAATTCTTGGCAGATAAGGCGGTATATATAATG 589730 28 100.0 33 ............................ CGGCAATTTCCTACTGCCGCTCGGTTCCGACAC 589669 28 100.0 33 ............................ CAATCAGCGTACCGCGACACGGACTGCCAACTT 589608 28 82.1 44 ........TA....C...A.......A. AAAGAAGTGGACCTCAACAGTTTAGGAGTATACAAATACTGCTG 589536 28 89.3 0 ...T.............A..A....... | ========== ====== ====== ====== ============================ ============================================== ================== 80 28 99.4 33 GTGCTCCCCGCATCTGCGGGGATGATCC # Left flank : CCAAGTCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGTATCACAGGGCAGATCCGAACCGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGTAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGAAGGCGGCGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGTCGAACTGGTTGGAGCAATGCAAGCAAGTACAGACGAGCGGCAAAGTTCCGGCGCTCGCGATCCAGCTGAGTCCAAGCGGGGCTGCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCAGTGTAGATGGTCTGAATTGTAATAACTGAGACAGGGAATAGAAGAGGGGTTCGAAATGCAAACTCATTAAAAATCGGAGATCTTGTCTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : CACGGGCCATCGGATGATGCCCTTCAGGAACACAAATATGAGAGGAGATGAATGGCTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTCATGACCATATTCCTGATGACCGGATCAACAGTTACGCGTCATGCTATCCCATTACTGATGATATGGATGAGACCGAACGGCGGGTCTGGGATTCGCTGGATGATGAGGACAGGAAAATGATCCAGTCGGATCGGACATACTATGGGACGAACTATGGTGCTGGTTTCGGCGGCAATAGCAAGGTGAGTTTCTACGATGTCCTCGGCATCAGGCAGTTCGACTGATTCATCCCGGGGCTCCTATATATTGCTGCAATTAGTAAAGGAAGCGCTATAGGAGCGCCGGGGAGCATCCATGACCGCTTCATGGTTCGAACATGAGTGTTTGATTCTTCTTCAGTCCCAGCAATCGCATTGATGCGTCCTGATTGAAAGTTGTTTCTGCCTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCTGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //