Array 1 13548-15099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWOT010000113.1 Streptococcus thermophilus strain CBC-S77 3CBC_contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13548 36 100.0 30 .................................... CAGCTCCTGATTTCCCCCAACAAATGATAT 13614 36 100.0 30 .................................... GGGCAGACGCAGGAGACTTAAGAACCGTAG 13680 36 100.0 30 .................................... GACTGACCTATAAATTTGTGCTTGAAGACG 13746 36 100.0 30 .................................... TGCAAGTGCAGCTAGTGTCATTTCTATGGC 13812 36 100.0 29 .................................... TTACTATAAACGTGTCGGTGATGTGTTGA 13877 36 100.0 30 .................................... AAGTAGGATTTGTGTCTGTCAACGTGAATC 13943 36 100.0 30 .................................... GTGGTCCCCAGACATCCCAGTGGTCAACCC 14009 36 100.0 30 .................................... ACAATAATAAAGTATTAGAAGGTCAAGTTG 14075 36 100.0 30 .................................... CTCCATTCTTGAATTTTTGCCAGTTGGCAT 14141 36 100.0 30 .................................... TACATACTTCGATAATCAGAAATCACACCC 14207 36 100.0 30 .................................... TGATTAAAATTAATAACGCCATAGAACCCA 14273 36 100.0 30 .................................... AAACCTATTTAGGCTAGATAATAATACCAA 14339 36 100.0 30 .................................... ACAATAATAAAGTATTAGAAGGTCAAGTTG 14405 36 100.0 30 .................................... CGTTCGGCTACTCGTTCAGCGTATTCTACA 14471 36 100.0 30 .................................... GACCGTTATAAGTGGTCAGATGATACCCCA 14537 36 100.0 30 .................................... CAGAATCTTTAAATCCGTATCTACTTTGTA 14603 36 100.0 29 .................................... AAAATGTCAATCTTAACGATGTTGAATTT 14668 36 100.0 30 .................................... GGTACTACACCTCAAACGGTGAGTGCATGG 14734 36 100.0 30 .................................... CGTAATTATTAAATTAAAGGAGGAAACAAC 14800 36 100.0 30 .................................... ACTTATCATCTTAAGTTTTTAGTGGGAGGA 14866 36 100.0 30 .................................... ATAATAAAATGAGCGGTAAAACATTAACAG 14932 36 100.0 30 .................................... TTTACTAGTACAAGTAATAACAGCAGAGGC 14998 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 15064 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCATACCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTACAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //