Array 1 1-1170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000192.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1 30 100.0 39 .............................. TCCCCATCCGTTATGGGGTCTACCTTGTATAGCTCCAAA 70 30 100.0 36 .............................. CCGTCAGGCTAACCTTTTTTTCAGACTCCGGAATTC 136 30 100.0 37 .............................. AGCTTAAAACGCTCGTCACTACTAAATTCCCGTTTTC 203 30 100.0 37 .............................. ACAATGGGGGCTATGCTGGCATAGTCCCCTTTGCATA 270 30 100.0 40 .............................. CAGGTTCCCCCTCATAATTAAATAGCCCCCGGGTATCCCG 340 30 100.0 35 .............................. GTCTGTGGAATCATAAGGCTCCTTTCTTGGGCACC 405 30 100.0 36 .............................. TTGCTTCGTTTCTGTTGTTTCGATAATTTCCTTGCA 471 30 100.0 38 .............................. ATGGCCTCGGTGACCGGCAATGCGGCCACATACTCACG 539 30 100.0 37 .............................. CGTGTAATATCGCGCAGCCGCAAGCGCGAGAATCAGT 606 30 100.0 34 .............................. CGAATCAAATAGGAGCGCATGCTAGCAATAGCTA 670 30 100.0 35 .............................. CGGGAACGTCTTGCGGAAATTGAAAAGCTGAAAGC 735 30 100.0 39 .............................. CGGCTATGGGAGAGGAAGAATTACGGGAACGTCTTGCGG 804 30 100.0 39 .............................. CCGTTCCGTTGCTCATCGCAAAATCGATTGAATGGGGCA 873 30 100.0 38 .............................. AAGACTTGTTTGCCGTAACGCCAGGCATAAATCCCGGC 941 30 100.0 35 .............................. TGGCATGATGCCGTGCAACGTGCTGGGGGATACGG 1006 30 100.0 39 .............................. CAACTCTAGAGTTGGGACTTGGTACAAAAATGGTCTCCA 1075 30 100.0 38 .............................. TCAGAAAAGCGAAAGACTACGGACGATATGGGCGTGTT 1143 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.6 37 GTTTGTAACGTACCTATGAGGAGTTGAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 39-1533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000193.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 39 30 100.0 35 .............................. TTGGCGGGCCATCTGCTATCTTCGGCATCTTATCA 104 30 100.0 38 .............................. TATTTCCCGCCACTTGCGCCACCTCCGTTATTTTGCGG 172 30 100.0 36 .............................. TCACTAAGGGACTTTTGTATCAATCAGAGGGTCTGC 238 30 100.0 38 .............................. AACAAAATGAAGACAAAAACGACAAAAACGCATACCGA 306 30 100.0 35 .............................. CATGGCAGGGGTAGCAAAAATCACGAAAGAGCAAA 371 30 100.0 39 .............................. CCATCAGTTCTTGATGATGCTTCGGCGCGTATGATGGCC 440 30 100.0 37 .............................. TATCATTTGGCATTGTCTTCGGCCTTGTAATGGCAGT 507 30 100.0 36 .............................. CAGCTGACGGTGCACCTGTCATCCCTCGTCCAGCAC 573 30 100.0 38 .............................. TTATTGGTGTTTGGTCAATAATAACTTCAGTCATTGTA 641 30 100.0 39 .............................. ATCGTCGGTGGGAAAGCGATCGGCGTGAATAAGTGGTAC 710 30 100.0 35 .............................. AACATTTGGTTGCGAATAACAGCTTTATGTTCCGC 775 30 93.3 38 ....A............A............ CAATGCTAGACCGGCATTTAAAATTGCCGGACTGCCTG 843 30 100.0 28 .............................. TCAAATTGGCGGCTGGGCAAGCTTCAGC Deletion [901] 901 30 100.0 38 .............................. CATTTAGGCTGCCTGGGTGGCTCATCAAGGCGATAAAA 969 30 100.0 36 .............................. AATACGCTCCGAGCCGGCGACGCCGTAAAGTTGAAC 1035 30 100.0 39 .............................. TCCATCTTGATTTTCCATTGCGCCCCTGCAAATTCTGCC 1104 30 93.3 36 A.......T..................... TTTGCCCAATTACTGATCCGTTGAGGCGAATAACCG 1170 30 100.0 34 .............................. CCGCCCTAAGACAAAAGACTACATAGCACCGGAC 1234 30 100.0 35 .............................. TGCAACCCGGCCCGACCGGACGCAGACCATTGGTC 1299 30 96.7 39 ............T................. TGCTCAAGGAACACACCGGATGTACTGATATAGATGCAA 1368 30 100.0 39 .............................. GTAATACATCTTTAAAATAATCAACCGATCCGAATTCCA 1437 30 100.0 37 .............................. TCCGGTGTTCACCTGCAAGGGCTTTTTCGAGTTCTTT 1504 30 96.7 0 ......................T....... | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.1 37 GTTTGTAACGTACCTATGAGGAGTTGAAAT # Left flank : ATTGTCGATATTGGATTTAATCGTGAACTGAGCCCGTAG # Right flank : TCTCGCTCCAATGGCTTCTTCCCAGCGAATTCGAGCCCCGTTTGTACTTTTTCTGCAACTAACCAGACCCAACTCCCCAAATCTCTTTTCACTTTTGCATGGAAATACCTAACCAACCTCAAAAACACATGATCTTACCCTCAGCGTCTCCCACCAGGAGGCGCTTTTCTCTATTTCCCCGGCCACCCCCAGCTCCTTTCCATAAGCCTCTTTTCCTGATTCGCCCCGACATCCCCCAAATAAGTCCACCGCTCCACCTAGCAACGCCCATCACTAAAAAACAAAAATATTGAATATTTTGAGGTTTGTTTATGTAAGTATGTACCATGTCAGCATACTATCCGGTCAGTATGTTTCGGGGGAAGGGGGATGGGCTAGTGAATTTTGATTATTCCGAGAAGGTGAAGTCGCTGCAGCGTACGCTGCTGGAGTTCATGGATGAAGTGGTGTATCCGAACGAGAAGACGTATGAGAAGCAGCTTCAGCAGGCCGGCAGCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 11429-9663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000001.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 11428 30 100.0 35 .............................. TCGGATACTCGCGACATCTCTCGGGCCCCGATCTG 11363 30 100.0 36 .............................. ATCAAAAGGGTGACGTTGGGGTGGACACGCCTGCGG 11297 30 100.0 37 .............................. CCGAATCGAGCTCCGCTACCACACGACGCCCTTCGAG 11230 30 100.0 36 .............................. CGAATTCGTTTCCTTTCTCGCTGCCGTGGGATGTTA 11164 30 100.0 36 .............................. ATTCGCGGGACTGGCAGATAGAACGTGGTCAGCGCA 11098 30 100.0 35 .............................. TCTTGTAGTCCTGGCTTCCACCGCGTCCATCTCCA 11033 30 100.0 37 .............................. ATGGCTATTGTCTTGACGGTTGCTGTCATGTGCATTG 10966 30 100.0 40 .............................. TTGTCCAGGACGACCAGTCGATTAATAAGACGATCGGCAA 10896 30 100.0 38 .............................. TTCGGAAGATTGGAATTTTACCCTGTCGGAGGCGATCA 10828 30 100.0 35 .............................. TCGAATTAAACACACGTATAGCGATACTAATCATG 10763 30 100.0 36 .............................. TACGACCATCAGCGAGGCGATGAATGAATGGAAAGC 10697 30 100.0 37 .............................. ACAGCGGATTCAAATCCGTTTCTTGGCTGTATTTCCT 10630 30 100.0 39 .............................. CTCGAATTGACCTCGGGGCAGCACGCAGATGAGTAGGAC 10561 30 100.0 35 .............................. CAATATGGAGGATGATTTTACATGGCAGGGGTAGC 10496 30 96.7 36 A............................. TCGCGGGCATGCTGCCTATCATGAGCTTTTTGCTCG 10430 30 100.0 39 .............................. ATGCATGGCAAGAGTATGAAAAAGGACGTAAATATCAAA 10361 30 93.3 38 ........A.......T............. CACTGTAGACCACTTGTGGCTGACTCCATTGAAGTAAA 10293 30 93.3 38 ........A.......T............. AACGGCTTTGTAGTCGCAGACCATTGTATAGGGTTCCC 10225 30 93.3 36 ........A.......T............. CCGTCACCATACTTGCTTTTAGGAGATATTTGCAGT 10159 30 93.3 36 ........A.......T............. TTTCTTTAGAATCACCGTTTTTGTTCATGTCACCTA 10093 30 93.3 38 ........A.......T............. ATGAGCATGGCCCTGACTTCACCGATATGTGTCCCTTG 10025 30 93.3 36 ........A.......T............. CTTAAAGTTGCTATCGTATATAACAGGTCTATACGA 9959 30 93.3 36 ........A.......T............. CTCTCATAAAATTCGGTTTGCTCCAGCTCTGCGATC 9893 30 93.3 35 ........A.......T............. CCTTAGGCAGCCATCCTACGCCTGGCGGCATGATG 9828 30 93.3 38 ........A.......T............. ACATTTACGGGAGGTGATTAGCGATAGACAAACTCGAT 9760 30 93.3 37 ........A.......T............. ATGCTAGGAGGAGAATTGGGAGGTGAGAATTCTATCT 9693 30 86.7 0 ........A.......T........T...A | T [9665] ========== ====== ====== ====== ============================== ======================================== ================== 27 30 96.9 37 GTTTTGAATGTACCTAAGAGGAATTGAAAT # Left flank : GCTTGGCATGTATGAAGAGCAAATCGTTGAAGAAATGACTAGTTTGTATACCACTCCTTATAAGAGAGCCACTTTTGGCCGATATTACCGCCTCAAGGGGAGAGTGCTAGAAAGTCAAAATAAATTAATTGAAGCTATTGATTGTTATTTGCAAAGCTCCATAGAGTACGCCCAAATATCCCGATATGACGAAGTTTTCAATTCAATGTCGCATGTTACTAGGGATCGTACCCTGAGGAGTATAGCTCCCGTTGTTCTTAACCCGATTTAGTATAAGAATGGGGAAACAACTAATCAGGTTTTTCTTTATTTTGTCGTCGATCCCTAATAGCGTAAAAACCCCCGGGGATCGACGACAACTTGAAAAATGAAGAAATGAGAAGGGGAATGTAGATTATTGGAGATAACATTATGACTTGCGTTGTTTATCAACTTAGAGCTATTGGCTTGTAGGACCAATAGCTGTCTGATAGAATTGGCGTAGGGAGGCACTTTTTGGG # Right flank : CTACGTTGACAAATCCCTATGAGTGGCAGCTACGCCTAGCTTACTCATAGGGCATTTTTGTTTTTATGGATTCCTTTAGTCAGAATATTTGACAAAAATACAACAACTTCGAGAAATAAATTGGAAAATAAACGAAGAGGTAGTATGATCGAACTAGTTAAATCAGGAGGGACTAGTCTTTGAGAATCAAGATTACATTGACCTTTGATGGCAAGCTTGTTGTACCTATCAATCATCAGGAATGGCTTCACGGGCTTATTTATCACAGTATCCGCGACGACGGATACCGGGATTTTCTTCACAATACGGGTTACCAGCAGGGGAAACGCCAATTTCGCATGTTCACCTTCTCTAGGCTAAATGGTTCATATCGATTAGACAAGGACTCCCACACCTTAGAATTTTCACCACCGCATGTTTCTTTCCTTTTCTCGGCATACGATAAAAAATTAGTTCAAGAATTGGTATCTTCTTTGCTGATAAGAGATGATCTTCGTATG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATGTACCTAAGAGGAATTGAAAT # Alternate repeat : GTTTTGAAAGTACCTATGAGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 14697-13136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000001.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 14696 30 100.0 35 .............................. ATAGTTTGCAAATTTAAAACGCCCTCAAACTCGTC 14631 30 100.0 37 .............................. CGAGTCCGGAATAACGAATAATAAACCATGGCAAATT 14564 30 100.0 37 .............................. TTGGGCAGCCGCTAACTTTTTCGTTCCGTTCGGGGCA 14497 30 100.0 36 .............................. TCGGGAGAGTGGAGAGATTGACGGATTTACACATCC 14431 30 100.0 36 .............................. TTACCGAAAGCGGTGTTAATTACGAGCGTGTCGTGC 14365 30 100.0 36 .............................. ACCGATTCAAGGATTTTGGGCCTGTATCGCCATATG 14299 30 100.0 37 .............................. TTGGGATGGGTGATAGGTAAGTGGGTTGCATATCAGA 14232 30 100.0 39 .............................. TATGATTAGCATGTATTCGGGCACGATAGGCAGCGGCAA 14163 30 96.7 37 .............................A TATCACATCGGTTGAAAAAAAGCAGAAGGATGAAAGA 14096 30 100.0 36 .............................. TCTAACCGCTGGACGGTATCAGGCGGTGGATAAAAC 14030 30 100.0 37 .............................. CAGTGTCGATGTAGATGGAATCACTAGTTTTCGTAAG 13963 30 100.0 36 .............................. TCAAACTCAGAACCGTCTATTTTTGCTACGATCTCA 13897 30 100.0 37 .............................. ACCTGCGACGGTTGCTGTGGAATCGGCTCTACATCGA 13830 30 100.0 37 .............................. GCGACATAAATAAGCGCCGCTGGGCGAAATGAGGAGG 13763 30 100.0 37 .............................. TTTAGATGTTGGGGTATATAGGCCCGGCGACCGTTCT 13696 30 100.0 38 .............................. TCAGTCAAGCCATTCATTCGCTCGCCTATCCGTTGTAG 13628 30 100.0 36 .............................. ATTGGTTGATAGACCTTGTTGCGGATATCGTTCTTG 13562 30 100.0 35 .............................. AAATGTGCCAAGGGGTGATTTTGTGCAAAAAAATT 13497 30 100.0 35 .............................. TATCGTGACTACAATCATCACGACGCCTGGCAAAA 13432 30 100.0 36 .............................. CGTCTCCATCCGCGATCTCGTCTAGGGCGGTTACTT 13366 30 100.0 37 .............................. TAGTCATATGTTTTCTCTTGCTCGTTCCATGTACCGC 13299 30 100.0 37 .............................. TTCTGTACACAAATCCTGCGGCGGAATCATCGATTTT 13232 30 100.0 37 .............................. TAACGCGATATCGTAGATCGTCGTCTATCGGCCCCCA 13165 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.9 37 GTTTTGGAAGTACCTATGAGGAATTGAAAT # Left flank : AGATGATCATAAGAGCCTGCCTATAGAGGACCCCCCCGCCATCTTTCCCGCTGTGGGCGCCTACCTTGACGATAACGGATACATAGACATTCTGGCCGTTGGAGATTTGAGAGCCTATCTAACGGGGAAATGAGTGATAGCCCTGGTAGTATGCCGGGGTTTTTAGGCGCTTGTCGATATTTGCGAAGTATTATAGAATGTGTCGAAATATCCTGATATGACGAGTTTTCAATGTCGCACGCTGCTAGAAGTGGCAGCATGAGAAGGATACCTCCTGTTGCCATAATCCGTTTGTATATTCTCCATTTTTTTGTCGTCGATCCCTAGTAGCGTAATAACCCCGGGGGATCGACGACAACTTGAAATATGAAGAAATGAGAAGAGAAATGTAGATTATTGGAGATAACATTATGACTTGCGTTGTTTATCAATTTAGAGCTATTGGCTTGTAGGAGCAATAGCGGTCTGATAGAATTGGCGTAGGGACGGCATTTTTTGGG # Right flank : CCATCTTCTTCCGCGATGGTGATCTGCTTCGCGCTTGTTCTGAAATTGCGATAGCTCATTGAAACTGACAGGGGAACACAACAGTTTTTGCCTGTAAATGATTTCATGTGGTTCATTCCGAAACGGATGAATAAACCATTATTGCTGTTGGAAGTATAAGTAAGTTTTGTTTTCGTCCCCCCACTTAGTGTGGTAAAATATAGGAACTATATTTTTCACTAGTTAGGAGGGATGAAGTTGCATGTCTCGCTCATAGGAACAATGGGAGAACTATTTCATATACAGGCGCAGCCAAAACATGACATTAGCACAACTCTCAGACTTATCCGGAAATTCCTAAGGGGACGATATCCAGAATAGAGAATGAAGAAGTAAAAAGGCCCGAATTTGGAACAATTCAACCGCTTGCCTCCGCTTTAGTGATACCATTTCAGGAAGTGGTCGAACGCTACATAGAGATTGATAAACGCTCTCATTCTTTATTAGAGATACTAAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAAGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 19375-19938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000031.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19375 32 100.0 37 ................................ CGATATCGAGGAATACGCAAAAAAGAAAAGAATCCGC 19444 32 100.0 35 ................................ CTGTATGATTCTTTGTTGTATGTATGGCAGATTGA 19511 32 100.0 35 ................................ CAAAGCGCAAGCAGTTTTCTAAGTGTGCAACGCCA 19578 32 100.0 35 ................................ CTCCGCTACTGATTGAAGTGGGGGAATCATCCGCG 19645 32 100.0 33 ................................ ATTACCTCACATGTAACAATGGGACGTATTACA 19710 32 100.0 34 ................................ GATCCGCACTGGAACGAAGGGCGTTGTAAGCTCT 19776 32 100.0 35 ................................ TTGGAAAAGGTGGGGGAACTCTTGAATGAAGCATT 19843 32 100.0 33 ................................ TGGTATTCTGGATCACCGGGCTGGAGATCGGCG 19908 31 96.9 0 ...............................- | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 99.7 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GCCGGTTGGATTAATTTTTATCGAACTGGATGGCGAGGCGGGCTATATCGGACTCATCACCGATCCATCCTTGCGCAATCAAGGGTATGGAAAAGCAATGGTGCGTGAACTTATGAATCATCCGGAACTGCAATCCGTACATACATGGGTGGCTTGCATCGAAGCCGACAATAAGCCATGTCTGGCTTGCTTCAAGTCCCTCGGCTATGTGACTGACGAGGAGGAGCCGGACGAGGACGGATTTTATAATTTGGTATATGAACGTTCATAAGTGAATGCGGCTACAAGAAGATTAGAACTATTCAAGCTCTGGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATGAAATTTCTATATTATAGGAAAAATCCATCTTTTGGTTTGCGGCAAAGGTGAGAAACACCTGCTTTAGATTGATTTTATGGATAATTTGATTCATTTAATCAGAACAGGTACGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : | # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 50529-50034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000055.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50528 32 100.0 35 ................................ TTCTACCACGTCTTTGAGCAGCACCCGATTCACCT 50461 32 100.0 33 ................................ TATAAAAAGATCGATGGCCTCATAATAACCTAT 50396 32 100.0 34 ................................ AATATGAGAAGGATTGGGATCTCGGGGATATTGT 50330 32 100.0 35 ................................ ATTTTCCCGCAAGTGCTGGTAAATCTCCTTATCAT 50263 32 100.0 33 ................................ ACACAAAAGATTGAACTGTCTTAGATGATTGCT 50198 32 100.0 34 ................................ TTCACCCAGCAATTCATATACCTTGGCATCAATT 50132 32 96.9 35 ...............................T GTAAACCAGTCCCAATGCTTCTCAAGCGTGGCCTC 50065 32 81.2 0 ...................A.......ATTCT | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCATCCTATGCGGATGCGTGGATTGAAAG # Left flank : ATGACGCTTTGTAATCGGAATCCCCTCGGAATTTGTCGCATCCTATGTGGATGCGTGGATTGAAATCGCAGATGTCGCACCAGCCATCAAGTCAGCTTCTTCGTCGCATCCTATGTGGATGCGTGGATTGAAATTCGCTCAATCCCACAACCACACCATGCTGGTCCCGTGTCGTATCCTTATGATACCTTGCTTTCTGCTTGAGTCAGTCGGGACGATTCGTTGGATTCTCTGTTTGCCTGTGATATATTGGGCAAAGGAATGGTAAGAGCCAACTAGAGTGAAGGGGATGTCCAAATATGAAAAAGAGCGACATGTGCATTAACAACAGGTGCGAATGTGAAGTGCACAAGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAATATTATCCAATAAAGTTAATTGAATTTTGATTATTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTACCATCAAACAGCTTTTTTGGTCTGTTTTGTGTTATTTTTCGCT # Right flank : TTAAACGCTGTTGAAGCACCGCGAAGGAAAAAAATGTCACATTCTAAGTAAATTCCTGCTAAACTGATTTGACGATGTTTATTTCTAATCGCTTGGTACAAAATCGTTGTTTTGAAATGATATGGGTTTAAGGGGGAAAGGATGAAGCGGGAATCATAGGGATCTATGGTGAGAGCCGTAGCAAGAATCTTTCCAGTTCTCCTCCTTTTGTGATCGCTTTATTTTCATTCAAGCATTGGTTTCCTTATCCGTGGCTATAAGGAAATATTGTTATATCGAATTGAATACCCTGTGCCCCGACCCATCCCCAGCGGGATGGGTTCGCTTCGCTACGGAACGACGACTTATCCGCAGTGATTTCCCAACCTTGAATTAGTTGATTTTTCGCTTTCTTGGATGCTTCCCTCCTCTCCCTCCATTGTGTGAGGAACTTGTCGAATCTCCACGTTTATCGGTTCCTTCTCTCCCGACTTTTTTTAAGGCTTATTCACCTTGCTCTT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 51802-50895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000055.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 51801 32 100.0 35 ................................ AAGGAATGCGCTGAACTATCCGAATACGAGAAATA 51734 32 100.0 35 ................................ CACCCAGTCTATTCATCCCATCTCATCAATCCACC 51667 32 100.0 36 ................................ TCGTTTTCTCTTCTCGTGATACCTCCAACGACATTT 51599 32 100.0 34 ................................ GATCTGGCTGCAGATATCATGCTGCCAATCGGTA 51533 32 100.0 34 ................................ GATGTACATGTCTTCGCCCTCGGCCGCTCGTGTC 51467 32 100.0 34 ................................ TGCCCTTGAATATATGGCACATCTCACTCGGCGG 51401 32 100.0 33 ................................ GCTAAATTCCCCGCGGTCGACCGATTCCGGTAA 51336 32 100.0 37 ................................ AACAAACGGTAGAAAACGGAATTTACATCTATATCCC 51267 32 100.0 35 ................................ CATGCTCAGAAGCCGAAGCCTGATGTGCTGCATAT 51200 32 100.0 37 ................................ AGATAAACACAAAACCGCGCTAAGGATCGGGGAGAAG 51131 32 100.0 37 ................................ TCGACGTCATCGCGAAGTACCCGCAGATTGACCGGAC 51062 32 100.0 36 ................................ GAATGACGCTTTGTAATCGGAATCCCCTCGGAATTT 50994 32 100.0 36 ................................ CGCAGATGTCGCACCAGCCATCAAGTCAGCTTCTTC 50926 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 100.0 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CCGGCCTTTTGCGGCACTTTTGCTTCCATGCTTTAACGTGGGGTCGCATTAGTACCGGGTATTTTTATGAAGGCTTTGGCTAACCATAGCAGGCATACGCCAGGATATCCGACCGAATGCACTCTTTCTCATTATTGATTTGAGATACTGCGTGTTCTAACTGTCTGCAAAGTTACCCATCACGACGAGCGGCTGATTCGCTGCCTGATTGATTCTATCGGGAGATGCGTATAAAAGTATCTTCTTAGCACACTTGTCCGTGATATACTAAGAAGTATGGTGCCGAAGATGCCAAAGTTGGCCGAGACATTCGGACGCACGGCCACTTCGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCATATTTATTGAAATATTATCCATAATAGTTAATTTATTTTGGTTTATTGAAGCTAAACTGATTTGTTTTCTTGAAGTTTTTAACCATGAAACGATTGTTTTGGTATGTTTTGTGCTATTTTTCGCT # Right flank : TCGCTCAATCCCACAACCACACCATGCTGGTCCCGTGTCGTATCCTTATGATACCTTGCTTTCTGCTTGAGTCAGTCGGGACGATTCGTTGGATTCTCTGTTTGCCTGTGATATATTGGGCAAAGGAATGGTAAGAGCCAACTAGAGTGAAGGGGATGTCCAAATATGAAAAAGAGCGACATGTGCATTAACAACAGGTGCGAATGTGAAGTGCACAAGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAATATTATCCAATAAAGTTAATTGAATTTTGATTATTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTACCATCAAACAGCTTTTTTGGTCTGTTTTGTGTTATTTTTCGCTGTCGCATCCTATGCGGATGCGTGGATTGAAAGTTCTACCACGTCTTTGAGCAGCACCCGATTCACCTGTCGCATCCTATGCGGATGCGTGGATTGAAAGTATAAAAAGATCGATGGCCTCATAATAACCTATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000007.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1 30 93.8 34 --.............................. AGGAGCTGGGCCACATATTCGCCCTTGACCATTC 65 32 100.0 33 ................................ GCCATTACTTACCGCTCCCCGCTGTGTATTTTG 130 32 100.0 35 ................................ CTCCGGGTACAGTGTCCGGGCCGTAAATGGATATT 197 32 100.0 34 ................................ GTTTTTGCCGTGTGTGTACTCCACGTTCCGTAAG 263 32 100.0 38 ................................ AATCAAGTTAAGAAGAAACTCAACTGCCACTCTATCAT 333 32 100.0 34 ................................ TAAAATCAGTTGAGTCATCTTCGTAGCAACTCCA 399 32 96.9 36 ...............A................ CCGCATACTGAAGCAAGTTTTTGTCTTCGCAGTGCT 467 32 100.0 33 ................................ GAAGGAGGAACAATGGATGGCGAGCGATGTAAA 532 32 93.8 0 .....................C...C...... | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 98.3 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : | # Right flank : TGTAGACCTCTCTAAGCAGTTCAAAAGCTCACATTGAGCGTCGCATTCTGCACGGACACATAGAAAACATGATGAGACCCAAAAAGCATCTACCCCCGTATCAAAAGATGACGTGGAGGCAGGATGCTTGTCTTTTTTTGTAGAACATAAGTTCCCTGACAGGGAGTTGTCACTTTCTTCAACCATAATAGAATTTATATCATCAGTACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAACAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTTTCTGCATTGAAGCGGACTGCGCTGGCTAGCATCCCGATCATCGTTTATTTGATGTGGCTTCCCCAATGGAAGTGGATCTTCTATGTTGTTGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCAGAAGAAGTTACGTTCTGACAAAGGATG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11843-12747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000007.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 11843 32 100.0 35 ................................ ACCATCGAGCCCTCAAGCCACTTGGCGACCTCTGC 11910 32 100.0 35 ................................ CAGAGCAGCACTTGACCCATCCGGTAAAAATACAC 11977 32 100.0 38 ................................ CCTTGCACAAATTGACGCATTTCTAAGCCCATTAGTTC 12047 32 100.0 36 ................................ CATTGCATCACTATCGGTGTCAAGTTGCGCGATCAC 12115 32 100.0 34 ................................ AAGTCACATTCAATCGATTTCTGCGTCTGAATTT 12181 32 100.0 33 ................................ CACGATGTTGTTGAGCGCTTCTTGCTCGCGCGA 12246 32 100.0 35 ................................ TTCATGGGATCCCAATCAACCGGGCGGCTGAAATC 12313 32 100.0 36 ................................ ACCTCATGATCAAGGCGGACGTTCATCCGGCGGGCT 12381 32 100.0 36 ................................ CATCTCGTTGGTACTGTCGGTCGTAGTAGACGGGTC 12449 32 100.0 35 ................................ TTCTTTATCTAAGTGTACATACTCATGATCTCGAT 12516 32 100.0 33 ................................ ATTTTCTACGTCTGTAAACTCTTTGTTGATAAG 12581 32 100.0 34 ................................ GACTCGATGCGGGCCTTGTTTACTTGACATGAAA 12647 32 100.0 37 ................................ CGCGCCTCACTTGGGTTGAGATCGACCAGTTTAAATG 12716 32 90.6 0 ...........C.CA................. | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 99.3 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CTGGAAGTAGGTGGTATAATTTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGTATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAGTTCGCCAGCTTGAAGATCCAACTTATCGATATGATCGATGAAAAGGAAGATAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGTGTGAAGGCATCGATCGATATGGAAGGGACCCTAATTTTCTAGTGCGAATGTGTAGTGCACATGAATTCCCCGGGGGATTCGCACCATGTTTTTTCTATATTATGGGTAAAACTATTTTGTAGGTTGAATGTAGGAGTAGGAAATAAGCAGTTTTTAGCTCTATGGATCAGTAATTTTGATTGATTGCGTCATATCAAGAGTGAAATGTGATTATTGCAATCATTTTTCGCC # Right flank : TGAACGTCGAAGGATACGGTATCCCCGGCTGTAGATTTCCCCAATCCCCAACCCGGGGAAGCCTTTCTTCTCTCCCCTCATACCTAATCGTTCACCTCCCAACTCCCTCCACCCAAAAATACAACGGCAGCTTTCCCCGTACATGCACTTCTGGGCCATCGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAAGAGAGACCGCTAGGCGCAAGTCGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTGCTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAGCCGTTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGCAACACGCTCATTGAGCACAATCTCCGCCTGGTTGCGCATATCGTGAAGAAATTCGACAACACCGGAGAAGACTTGGAGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 47827-47133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000073.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 47826 32 100.0 34 ................................ CAAAATTCGGCTCGCTTTTGAAAAACGACTTACC 47760 32 100.0 33 ................................ CAAGCGGGGCTGGAACTACAGAAGCCAATCGTT 47695 32 100.0 34 ................................ ATAAAAATCGGAGGTGAAAATCAATGGTCGTAAC 47629 32 100.0 35 ................................ CCTTGAACTGGAGCGCAGATGGAACAGTCCGGAGA 47562 32 100.0 34 ................................ TTCAGGCGCCGGAACCGTATCGGTGTCCTGCGTC 47496 32 100.0 34 ................................ CACGCCGTAGTGATATTATATAAGGTAAATATTG 47430 32 100.0 34 ................................ GCCCCAAATCACGGGCATGAAGCCGATTTTGTTA 47364 32 96.9 35 ............A................... ATGTAGATCTTTTCAATCGCATCTACCGGTTGCAC 47297 32 96.9 34 ............A................... TTCGAGTTTTCTTATCGGATCTTCCCGCATCTCA 47231 32 100.0 33 ................................ CGCGATGCAACTACCAAAGCCGCGACGCTAATG 47166 32 90.6 0 .......................A....CT.. | TA [47139] ========== ====== ====== ====== ================================ =================================== ================== 11 32 98.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AGAAAGCGATCGGCGAGGGCGGCCGGACGTTGCCGCGCATGCTGTTCACGAACAAAACTTATACGTTCACGTCCGTCCACTTCCTCCAGAAACGAAAGGCGCCTGGCCGTTTTGCTGATAGACAGAGACTCATCGAGACAGACGGTATCCGGAAAGCATGGATAGATAGGGGAACGCTCCTTGATGGTTTTTGCTTGAAGCCGTCTGTCAAGGACTTAGCGCCACACATGTAGTATGATATACTCAGAATCAGGATAAAGATGTAATTGACAAAATCGCATTTATTCCGTGTGATGCCCAAAATCTCATTCCGTGGCAAGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAAGTTTATTTAAAAATAATCCAAATTAGTTATTTTAAGGTATTTTTTTCGAGACTGTTTCTGGTTAAATATCTCATTTTGTTCCGGAATAGTGGTAATTAACTGATTAATTTGTCATGTTTTATGTTATTTTTCGCT # Right flank : GCTCTTGAACGGCGGGATGTTTGGTCGCGTCCAAATGCGATGAAGCGGAATGGAACAATGCTTCCAGTCCGGGCATGGTGGCTGTTCGTTGGAATGAGAGGCGGCGGAATCCATAACGCAGTATGCCTGAGCTGTCTCGCACTTTTTGTCGCATCGTGCCGGAGTGCAGGGCATAAATCAATGCATAGCCATAGACCGCTCCCTCTGTGCACTCTCCCCTTCGGTCAGAAATGTGCTCGTTCTGAGCGGATGGGAGAGTGCTCATAAGGAAGAGAAGAGGGGAAGAATGCCCCGAGCACAGAGCGGAGGATCGTGGGGTAAAAGGCAAAGAGCCCAGCCCAGACGACGGCACATCGTGTCTTGAGCGGGGCAACGGATTTTGCTCCGAGGGGATACGTTAAGCGTTGGCCCACCAAGAAAAGCTCCCCTCACGTTCCCGGTTTATTCGGAGGCGGGCAAGACGCCCTTCAATGGAATGTCGGTCGTTATGCGGCGCACTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 152-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000090.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 151 32 100.0 34 ................................ GTTGATCCGTCAGTACGAAGAAATGTTAAGGCAG 85 32 100.0 38 ................................ AAGGATAAGGTGGAACTGGCTGGACAGGATGGCGGACC 15 15 46.9 0 ...............----------------- | ========== ====== ====== ====== ================================ ====================================== ================== 3 32 82.3 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTCATCTGGCTGACCTGCTGGTGCCGAATGGCTGCCCCCAAACCCTATAACCCGTTAGAGTCAGCGGCAATGATGTATTTCCTCGTCTTTGCCCTGTGTTGCCAGGCCCCAGGCCAACAACCGGGGCTTGCCCTCGCCTTAGTGCCCCCCCAAGGAATGGATTACTCGTGGCGCAACGGCCGTTACCTTATCCCGTGACTCATGATATACTTAATGAGAGAACAAGTTGAGGAAGCGGACAGAATGAGGATAATATCCGGCCCCTTCGGCCCGGCGAGGAAAGCGGAGTCGTGCGATTTTGATGATTAGGCACACGACGGGTGCGAATGTGAAGCGCACATGAATTCCCCGGGACATTCGCACCATGGTTTTTACATTATTATCCAAATAAACCGAAGAAGAGTTATGGATTTAACGTAATTTTTGGTTCATATATCTATTTTATGGTTTTATTCAATCATACTTGAACGGATATTTTACACATTCAGTCAATTTTCGCA # Right flank : G # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.11, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12469-13096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVK010000175.1 Paenibacillus dendritiformis strain CRN 20 S20_contig_175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 12469 32 100.0 38 ................................ CAGAACACCCCAACGCACATAATCCCAACCAGAAGCCC 12539 32 100.0 34 ................................ CGCCAGCGGATAAATCTCTTCACCAGTCGGCATA 12605 32 100.0 33 ................................ GTGATTAAAAGTGATGGGCGTCAGGTATAGGAC 12670 32 100.0 34 ................................ CGATCTGCTTTGGCTGACAGTTCGCGATGTTCGC 12736 32 100.0 34 ................................ TTTTGAGCATTGCGCAGCTCATCGTGCAGCAGCG 12802 32 100.0 35 ................................ AACAAACGGTAGAAAACGGAATTTACATTTATATC 12869 32 100.0 32 ................................ CCGAAATTAATCGAGCGAGAGAGCGGATTTGG 12933 32 100.0 34 ................................ ATTAATATCAAATCGTGGTCGGACCTCGGCGACT 12999 32 100.0 34 ................................ CTCCGGGATGATCCATTCGTACTCCGGACGGAGC 13065 32 81.2 0 ...C......G.....A...C..A.......C | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 98.1 34 GTCGCATCCTACGCGGGTGCGTGGATTGAAAT # Left flank : AAGGAGCGAAGCAACTCGACAAATAGCTTTTTACTGGACAACAGAAAGCGATATGATGTATCGTGACGGTAATGAATCGATTGGCGTTCGTCGGATTCCGTTCCCATCGCTGCCCCTCCTTCCTGCCATCTTTTCCTTTATTATACCTGATTATAAGTCGTGGGGAACAGGGGGGGAATCCAGCCGAGTCTATGCTGTAAGCCATATTTGCCAACGCAACTTCTGGATGAGTGAGTCTGAAATGATCCATCATTATAGATCCTCCTGTGGTATACTGAAAAAGAAGTTAAGAGCCTGTTTGCAATGGAGTAAAAAATCTGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAGAGTTATTGCAATGTTATCCAATTCAGTTTGTGAAAGTAAATTAGTTTAAAGTTATTTGAAGCTAAAACTCTCACTTGCCTCGAAATTTTAGAAAAAAATTGATTGTATTGTTATATTTTATGTCATTTTTCGCG # Right flank : GCAACCGTCCTTCGGTCTTGGGGCAAAGTCGATAATGTTTCCGATGCGCTACAAAAGCAAATTTTCTATGGCAATCCCGATTGTGAGGAGGCTGTCCCACAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATGTACAGATAAGAGAGTGGCAGGAAGACGGCGGACGGCAAAGCGGCGGAATAGGGATGGGTTGAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAATTCCTGCATGGATCAGGCTGTTGAGAAAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //