Array 1 4232687-4228571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029989.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4232686 29 100.0 32 ............................. GCTGATGAGTTCCCCGGCTGGGAACTGGTGCC 4232625 29 100.0 32 ............................. AAAACATTATTGCTATCGTCAATCGCTCATTC 4232564 29 100.0 32 ............................. GATGCGTCGACCGGTCTGATTATTCAGTGGGG 4232503 29 100.0 32 ............................. CCGCTTTTATTGCCTCTCAGTATTATAACAAC 4232442 29 100.0 32 ............................. TCTGACGCAATGATGTTTTTTATAGGAGTATT 4232381 29 100.0 32 ............................. GAGGAGGCAGCGCCCGCCGCAGGATGAGATTA 4232320 29 100.0 32 ............................. ATCGAGCATAAAAGCCCCGAATGGGGCGAAAA 4232259 29 100.0 32 ............................. CAAAAAGTGCAACTAAAAGTTCTATTTTGGGG 4232198 29 100.0 32 ............................. CCAGCGCACGCTTCAGCACAATCAGAATTTTG 4232137 29 100.0 32 ............................. AGAAATCACGCAACCATCCTGACGCCACCCTG 4232076 29 100.0 32 ............................. GCCTCCGACGTACTCTCAAACATAAGAGCGGC 4232015 29 100.0 32 ............................. CCAGTAATGCCCTGGCGAAAACCGGCGATGAT 4231954 29 100.0 32 ............................. GAGAACGTCCCGGCCAACAGCCTCGCGTACTC 4231893 29 100.0 32 ............................. TCAGCACAAAGAACGGTGCTGATTATATTTAC 4231832 29 100.0 32 ............................. TCAGGGCAGACCAGATAGACGTTACGGCCTAT 4231771 29 100.0 32 ............................. GTTGGCGGTATCCGGTTGCTTCGCCGGAGGGC 4231710 29 100.0 32 ............................. GCCTTCTGATAATGGCTATGGCGAAGATGAAG 4231649 29 100.0 32 ............................. TCAGATTAATGACCAATTTGATAAAATGATTG 4231588 29 100.0 32 ............................. CGTTCCGTGCATATATATCAGTTCATATTCGT 4231527 29 100.0 32 ............................. GAACTTCAGATAATAAATTATTTTCTGGTTTA 4231466 29 100.0 32 ............................. GTTGTACATCTAGAGGTCAAGCGCGTAGATAC 4231405 29 100.0 32 ............................. ATGATATGGGATGGATGGCATACACACAAAGA 4231344 29 100.0 32 ............................. TTATTAGATCGTGGTGGAGTAAATATCCCTAT 4231283 29 100.0 32 ............................. AAAACATTTATGGAAATTGCTCGGCGTAATCA 4231222 29 100.0 32 ............................. CTGGCGAAACAACTCGCATTGGCGGAGATATT 4231161 29 100.0 32 ............................. CCGTTATTGGTCTTACTAAATAAGTACCAGAA 4231100 29 100.0 32 ............................. GAAAACGTGGAGCACCGCCAAAACTCGTTCTT 4231039 29 100.0 32 ............................. CCGGCGATATCGATATCAGCGATGTGCTGCAT 4230978 29 100.0 32 ............................. TCGACGGCATTTATGCCCCAGGAGCAGTAACC 4230917 29 100.0 32 ............................. ACGCCCTGGCTGGCAAGAGAGCGGGTTTTTCT 4230856 29 100.0 32 ............................. GCTTCACTCACAAGGTGTCTGGGAACCGTTAG 4230795 29 100.0 32 ............................. GCCGTAGGCGATGGCAACGACGCACTGCCGAC 4230734 29 100.0 32 ............................. AACGCCAGCTTTGCCTGACGGGTCTTGTTAAA 4230673 29 100.0 32 ............................. GCACAGGGTTTATTTACGGCATGTTTGTCATC 4230612 29 100.0 32 ............................. GCCGGTCTTTGAAAACGTGGCATTAGAAAGTA 4230551 29 100.0 32 ............................. CGCGTCTGAAACGGATTGATTCCGACATCCTC 4230490 29 100.0 32 ............................. GCTAATTAATCTATCAGGGCTTAAATTCAAGA 4230429 29 100.0 32 ............................. GCACCGGCGAACCCGGCATTATACGTGTACAA 4230368 29 100.0 32 ............................. GTAAACAAAGTCACGGGCGGCAAACAGTTCAG 4230307 29 100.0 32 ............................. GTCGCCAGCGGCCTGTGTCCATGCACCACCTC 4230246 29 100.0 32 ............................. TATCATTTCGGCGTTCATCACCTTGTACCCCA 4230185 29 100.0 32 ............................. CATTGGTAACGCCATTTATTGCTGGAAATGGT 4230124 29 100.0 32 ............................. GGTATTACTGGATTCAGCATAACGGTGTTGTT 4230063 29 100.0 32 ............................. GTTGACCAGTCGCCAGCACTGGCACAGCGGAT 4230002 29 100.0 32 ............................. CCGTGAAGTATGGTTTTGTTGCTGAACGTATC 4229941 29 100.0 32 ............................. CAGGCGTTATCAGATGAGCAGCGACTTCAGAT 4229880 29 100.0 32 ............................. GAAGAGACTGAAATCGACGTAGGAGAATCAGT 4229819 29 100.0 32 ............................. CCGTTGCCAACGGGGGTACGCTGTACGTCTAT 4229758 29 100.0 32 ............................. GCCCCCGTTCCGGCCTCCGGCTCCAGTATCCG 4229697 29 100.0 32 ............................. GCAAATCCACTCGGAAGAATAAAAGTCACCAA 4229636 29 100.0 32 ............................. CGCTGGTTTCGTTCCGGTTCCCGCTACCTGTT 4229575 29 100.0 32 ............................. GCTTCAATAACATCGTCAGCCTTGAGATATTC 4229514 29 100.0 32 ............................. CAGAACGCCCCGCATCGCTTGCAACGATCGGG 4229453 29 100.0 32 ............................. CAAATTTGCATTATTGCGAATGACGTCTTGAG 4229392 29 100.0 32 ............................. ATTGGTGCAGGCATCAACGACGGTGATCTGCT 4229331 29 100.0 32 ............................. CCGTTCTTCTTCCGGTATGGCGTCCAGACGCG 4229270 29 100.0 32 ............................. GTTAATGCCTTTAAAACAAAGCGCCTCAATAT 4229209 29 100.0 32 ............................. GAACAACGCCAAGCGGCGGAGGAGATTCACGG 4229148 29 100.0 32 ............................. CTCGACGGCGACCCAACACAACTACCGGACCA 4229087 29 100.0 32 ............................. AACACATTGGCGTAAAAGACGACGTCACAAAC 4229026 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 4228965 29 100.0 32 ............................. TAATAGCCGTTAATCAGGGTACGCAGACGGAC 4228904 29 100.0 32 ............................. TCAGCGCCGCGTCTGACGCCGGATCATATTGA 4228843 29 100.0 32 ............................. TTGCCTTACATGGACAACGTTGTGTGGAAGAG 4228782 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 4228721 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 4228660 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 4228599 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 68 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGTAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTTATCCGTACTACGTCGCGACTACGGTGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4515678-4513045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029989.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4515677 29 100.0 32 ............................. GCTGATGAGTTCCCCGGCTGGGAACTGGTGCC 4515616 29 100.0 32 ............................. AAAACATTATTGCTATCGTCAATCGCTCATTC 4515555 29 100.0 32 ............................. GATGCGTCGACCGGTCTGATTATTCAGTGGGG 4515494 29 100.0 32 ............................. CCGCTTTTATTGCCTCTCAGTATTATAACAAC 4515433 29 100.0 32 ............................. TCTGACGCAATGATGTTTTTTATAGGAGTATT 4515372 29 100.0 32 ............................. GCCATCAATCCCCCTTTCCTGAAAACCTCAAC 4515311 29 100.0 32 ............................. TTAACCGGACGATCGTCCTGATCCTGTTGAGG 4515250 29 100.0 32 ............................. GTTCCGGGTTGCAACTGGCGGCTAAACTGCTG 4515189 29 100.0 32 ............................. GAGGAGGCAGCGCCCGCCGCAGGATGAGATTA 4515128 29 100.0 32 ............................. ATGACCGGAAATAAATACGCTACGGTTGATTT 4515067 29 100.0 32 ............................. GTTCCTGAATGTTGCGGCGTTTGATGTGACGT 4515006 29 100.0 32 ............................. TGAGCAAACACCAGAACCGTTACCGCAATCAC 4514945 29 100.0 32 ............................. ACCTCCTTTACCCTTCCAGCGGCTGATGGTTG 4514884 29 100.0 32 ............................. TTAATGGAATAGAATTTGGTGGGGGTGGGTCA 4514823 29 100.0 32 ............................. CCTTTTGTGTTTTCATCGCCCCGCGCATACCG 4514762 29 100.0 32 ............................. ACGGTCAGGGCTGGCACCTGTACAGCCAGCGA 4514701 29 100.0 32 ............................. TTGAATTGCCTACAGGCAAGCGTGTGGCTTTC 4514640 29 100.0 32 ............................. AAATTTCCGCCTCCTCCATCTGAACGAATTTA 4514579 29 100.0 32 ............................. GCAGGTGGTAACGTCTCCGTTCAGTCCGCAGA 4514518 29 100.0 33 ............................. GCGGATATTTGACAAACCAGCCACAGGACAACC 4514456 29 100.0 32 ............................. TACGCTTAACTGGTAAAGTGGTGCTAGCCTTC 4514395 29 100.0 32 ............................. TTTTTTGACAACGTGATCACCCGGACAACGGA 4514334 29 100.0 32 ............................. GTAAACAGGGCAATACCCTGGTTTATTCTGAA 4514273 29 100.0 32 ............................. AACGCCGTTGGGATCGAGTTAATAAGCAATAC 4514212 29 96.6 32 ............T................ GTGAGCATCAGGTTCTACGCATTAGCGGCCAA 4514151 29 100.0 32 ............................. CTGTTGGAGTACTGCGCTGGTTAGCTGCCTGC 4514090 29 100.0 32 ............................. TTGCCGTCCAATATCCTGTCGTGTCTGTCGGC 4514029 29 100.0 32 ............................. GAAACGCCGGGCGTGACCAGCGCCTGGGTGTA 4513968 29 100.0 32 ............................. GCTATTGTTGAGGCTGACGGCGAAGAATTTAA 4513907 29 100.0 32 ............................. CCGCAGCGGGGTCAACTGGCGGCGTTTGAGGG 4513846 29 100.0 32 ............................. GTTATCAGCCTGTTTTTATATGTGGTGGATAT 4513785 29 100.0 32 ............................. GCAAAAAAAACCGCCATACGCCGCCTGTTCAA 4513724 29 100.0 32 ............................. CAGCGTTAACCGGCACACTGACCGGGGAAAAT 4513663 29 100.0 32 ............................. AGTCAGTCGGGGGATACGTTCCTCTACCGGGG 4513602 29 100.0 32 ............................. GAGTCTGACGTTAACAGCATTATCACGCTCTT 4513541 29 100.0 32 ............................. AATATAAAGGTGAATACAAAGAATGGTGCTGA 4513480 29 100.0 32 ............................. TCCCGTCTGGTCAGAAATGGCACGGATTAACC 4513419 29 100.0 32 ............................. GACGGCGATATAATTGTTTTATCCGGTCTGAC 4513358 29 100.0 32 ............................. GCGTTGTTTTTCGTCATGCTGGCAATATCCGG 4513297 29 100.0 8 ............................. GCGGTAAT Deletion [4513261] 4513260 29 69.0 32 TC...TA.G.T.TAG.............. TGGATACCAGCCGTAGTGCGTGATAGTGACGA ATAA [4513245] 4513195 29 100.0 32 ............................. AGTCCGGCGCTTATTGAAATTAAACACTCCGA 4513134 29 100.0 32 ............................. GTGATATTGCAGGCGCGATACTGTGTGCCATT 4513073 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGTAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : AAAGCAGTCTAAATCCCCTTAGATACACCCAGTAGTTGTTACTGCTGCCAGTGTCATACCTGTTGTGGTCGGCGCTGATATTATATGGGGTATCCGGGATATGGAAATCACTGTAATTCACAGTCTGCTGCATACAGCCCCGATTATCCTTCTGCAGGCTGTAACTCACCTGACGGCTGTCGTCACACGGAATACTGAAACCACCATTCCCCACCTGCGCCAGTTCATACCATTTCATCAGCTCAGCGGTTCCCGGCTCGTTTTCGGCGGTTGCCCATGGATCCATATCTTCTTTAGCTACAGGCTGGTAACCCCTCGTGTTTTACCTCAAAAAAAACGCCGCCTTTATCCATCGACAACACGGCATGCCATGTTGCATCCCTCTACTCATTGTGCAGCCCCATTGATAAGGTTCTCTATTGGTACAGAACTACCTGTCAGATTAGGTTTGGCTATTGCGCAATAGATGTGTCAGGTCAAATCTGAGCTAATATACGTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //