Array 1 1216893-1216137 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP060644.1 Streptococcus pyogenes strain TSPY1309 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
   1216892	    32	 100.0	    33	................................	AGAGTACTTAGTGCGCATATTGTCTATGGCAGT  	
   1216827	    32	 100.0	    35	................................	TGATAGGGATTGACAAACGCTGCAATTCTTCCCAA	
   1216760	    32	 100.0	    33	................................	TTTTTTATTTTTAAAAGTAAGGAAGTGAGGCGA  	
   1216695	    32	 100.0	    33	................................	ATAATTTCTGATTTGTTATATTTAGTCATTTTC  	
   1216630	    32	 100.0	    34	................................	AAACTGATATTTATAATTTTTTAACCGAGGTACA 	
   1216564	    32	 100.0	    33	................................	TTCTCAAGAAAGCTTTGAGATGATTGTGCTTAA  	
   1216499	    32	 100.0	    34	................................	TTTAGTTTGCTGAGCTGCTAAAAGTTGCTCTCTT 	
   1216433	    32	 100.0	    33	................................	AAAGTAAGAGTCGCTATTATGTTTTAAGACACC  	
   1216368	    32	 100.0	    35	................................	TTTGATGTGGCTCACATCGACCGTCTTGGGGGTTA	
   1216301	    32	 100.0	    35	................................	AAGTAGGTGGCCCCGCTCGCTTTAATACTCGTGAC	
   1216234	    32	 100.0	    34	................................	ATTTAGTCGCCAACTTTAACTATGATCAAACTTG 	
   1216168	    32	  93.8	     0	.......A.......................G	|                                  	
==========	======	======	======	================================	===================================	==================
        12	    32	  99.5	    34	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                   	       

# Left flank :   AAGGCTATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA
# Right flank :  ATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.70,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : NA
//