Array 1 2977893-2976460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028172.1 Salmonella enterica strain CFSAN064033 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2977892 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 2977831 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 2977770 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 2977709 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 2977648 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 2977587 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 2977526 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 2977465 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 2977404 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 2977343 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 2977282 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 2977221 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 2977160 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 2977099 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 2977038 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2976977 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2976916 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 2976855 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 2976794 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 2976733 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 2976672 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 2976611 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 2976550 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 2976489 29 100.0 0 ............................. | A [2976461] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2995523-2994457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028172.1 Salmonella enterica strain CFSAN064033 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2995522 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 2995461 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 2995400 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 2995339 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 2995278 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 2995217 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 2995156 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 2995095 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 2995033 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 2994972 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 2994911 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 2994850 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 2994789 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 2994728 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 2994667 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2994606 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2994545 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2994484 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //