Array 1 962828-964871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078531.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Colony566 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 962828 29 100.0 32 ............................. GTCANNNNNNNNNNNNNNNNNNNNNNNCATAT 962889 29 100.0 32 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNACCT 962950 29 100.0 32 ............................. GGCNNNNNNNNNNNNNNNNNNNNNNNNNACGA 963011 29 100.0 32 ............................. CCAGCGTNNNNNNNNNNNNNNNNNNNNGGCGT 963072 29 100.0 32 ............................. CAGGANNNNNNNNNNNNNNNNNNNNNTTTTGG 963133 29 100.0 32 ............................. GTCANNNNNNNNNNNNNNNNNNNNNNNTCCTC 963194 29 100.0 32 ............................. ATTAANNNNNNNNNNNNNNNNNNNNNGGTACA 963255 29 100.0 32 ............................. ACCGNNNNNNNNNNNNNNNNNNNNNNNCCGAT 963316 29 100.0 32 ............................. GCGGNNNNNNNNNNNNNNNNNNNNNNNNGCGC 963377 29 100.0 32 ............................. GCGTNNNNNNNNNNNNNNNNNNNNNNNNCGAT 963438 29 100.0 32 ............................. AAAAAANNNNNNNNNNNNNNNNNNNNGCTGGC 963499 29 100.0 32 ............................. GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNT 963560 29 100.0 32 ............................. AGTTNNNNNNNNNNNNNNNNNNNNNNNNNCAG 963621 29 100.0 32 ............................. ATTATNNNNNNNNNNNNNNNNNNNNNNNNGGT 963682 29 100.0 32 ............................. ACCANNNNNNNNNNNNNNNNNNNNNNNNACTG 963743 29 100.0 32 ............................. AAAAAANNNNNNNNNNNNNNNNNNNNNNNTGA 963804 29 100.0 32 ............................. ACGCNNNNNNNNNNNNNNNNNNNNNCACAACA 963865 29 100.0 32 ............................. AAAAAAGNNNNNNNNNNNNNNNNNNNNNNNGA 963926 29 100.0 32 ............................. ACGCGANNNNNNNNNNNNNNNNNNNCACAACA 963987 29 100.0 32 ............................. CCGGANNNNNNNNNNNNNNNNNNNNNNNNCGG 964048 29 100.0 32 ............................. ATCTTNNNNNNNNNNNNNNNNNNNNCGGGATC 964109 29 100.0 33 ............................. GCTNNNNNNNNNNNNNNNNNNNNNNNNNNCAGC 964171 29 100.0 32 ............................. GTGATCGCGAGTGCNNNNNNNNNNNNNNNNNT 964232 29 100.0 32 ............................. GTGAGGTNNNNNNNNNNNNNNNNNNNNAATGA 964293 29 100.0 32 ............................. AGGCTNNNNNNNNNNNNNNNNNGGAACGCGTC 964354 29 100.0 32 ............................. CGACGCGNNNNNNNNNNNNNNNNNNACCGAGC 964415 29 93.1 33 ...........................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGC 964477 29 100.0 32 ............................. ACCGCNNNNNNNNNNNNNNNNNNNNNNNGGAT 964538 29 100.0 32 ............................. GTANNNNNNNNNNNNNNNNNNNNNNNNAATTC 964599 29 100.0 32 ............................. CTACNNNNNNNNNNNNNNNNNNNNNNNNTTTG 964660 29 100.0 32 ............................. CGCGTGNNNNNNNNNNNNNNNNNNNNNNNNNG 964721 29 100.0 32 ............................. CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG 964782 29 100.0 32 ............................. CCGGTANNNNNNNNNNNNNNNNNNNNNNNCGA 964843 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTCTCCANNNNNNNNNNNNNNNNNNNNNNNNATGTGTTCCCCGCGCCAACAAGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981439-984213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078531.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Colony566 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 981439 29 100.0 32 ............................. CGGTNNNNNNNNNNNNNNNNNNNNNNNNNCTG 981500 29 100.0 32 ............................. GAANNNNNNNNNNNNNNNNNNNNNNNNNNGTT 981561 29 100.0 32 ............................. CCCGCATNNNNNNNNNNNNNNNNNNNNNNCCT 981622 29 100.0 32 ............................. GCGCNNNNNNNNNNNNNNNNNNNNNNGACGAT 981683 29 100.0 32 ............................. CCAANNNNNNNNNNNNNNNNNNNNNNNNTATT 981744 29 100.0 32 ............................. AAGGNNNNNNNNNNNNNNNNNNNNNNGTCATT 981805 29 100.0 32 ............................. GTAGGNNNNNNNNNNNNNNNNNNNNNNNNAAC 981866 29 100.0 32 ............................. GTGGNNNNNNNNNNNNNNNNNNNNNNNGAGTC 981927 29 100.0 32 ............................. GAGGGNNNNNNNNNNNNNNNNNNNNNCCGGGC 981988 29 100.0 32 ............................. TGGNNNNNNNNNNNNNNNNNNNNNNNNNCACG 982049 29 100.0 32 ............................. GCAACCANNNNNNNNNNNNNNNNNNNNNNACC 982110 29 100.0 32 ............................. GGAGNNNNNNNNNNNNNNNNNNNNNNNTGTTG 982171 29 100.0 32 ............................. AATGNNNNNNNNNNNNNNNNNNNNNCAAAAGG 982232 29 100.0 32 ............................. TGTTTTNNNNNNNNNNNNNNNNNNNNNNNGCG 982293 29 100.0 32 ............................. TGGATGATNNNNNNNNNNNNNNNNNCGCTGCG 982354 29 100.0 32 ............................. TTTANNNNNNNNNNNNNNNNNNNNNNTCATGG 982415 29 100.0 32 ............................. CCATNNNNNNNNNNNNNNNNNNNNNNNNNAAA 982476 29 100.0 32 ............................. GCGGGTGANNNNNNNNNNNNNNNNNNNNACGA 982537 29 100.0 32 ............................. CCGTNNNNNNNNNNNNNNNNNNNNNNGGTGGT 982598 29 100.0 32 ............................. GCCCNNNNNNNNNNNNNNNNNNNNNNNCACCA 982659 29 100.0 32 ............................. CATTNNNNNNNNNNNNNNNNNNNNNNNNGTAG 982720 29 100.0 32 ............................. CGTTCNNNNNNNNNNNNNNNNNNNNNNNATTT 982781 29 100.0 32 ............................. GTGTGGTNNNNNNNNNNNNNNNNNNNNNNAAA 982842 29 100.0 32 ............................. GCAGCNNNNNNNNNNNNNNNNNNNNACCGACA 982903 29 100.0 32 ............................. GTGTGCNNNNNNNNNNNNNNNNNNNNNNTTCT 982964 29 100.0 32 ............................. AGCCCNNNNNNNNNNNNNNNNNNNNTGTCGGT 983025 29 100.0 32 ............................. CCATNNNNNNNNNNNNNNNNNNNNNNNAAGCC 983086 29 100.0 32 ............................. TGGATNNNNNNNNNNNNNNNNNNNNNNNTGCG 983147 29 100.0 32 ............................. CGGCCNNNNNNNNNNNNNNNNNNNNNNNNCCA 983208 29 100.0 32 ............................. GGNNNNNNNNNNNNNNNNNNNNNNNNNNNGTG 983269 29 100.0 32 ............................. CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG 983330 29 100.0 32 ............................. GAANNNNNNNNNNNNNNNNNNNNNNNNGGAGC 983391 29 100.0 32 ............................. AAATTAGNNNNNNNNNNNNNNNNNNCGCAATG 983452 29 100.0 32 ............................. GANNNNNNNNNNNNNNNNNNNNNNNNNNGAGC 983513 29 100.0 32 ............................. AAATNNNNNNNNNNNNNNNNNNNNNCGCAATG 983574 29 100.0 32 ............................. ACTCAGGCGNNNNNNNNNNNNNNNNNNNNGTT 983635 29 100.0 32 ............................. CTGGNNNNNNNNNNNNNNNNNNNNGCCGGCGG 983696 29 100.0 32 ............................. AGANNNNNNNNNNNNNNNNNNNNNNNNGAACT 983757 29 100.0 32 ............................. GGAGGTNNNNNNNNNNNNNNNNNNNNNNGGAC 983818 29 100.0 32 ............................. CCAGCANNNNNNNNNNNNNNNNNNNNCTGCCT 983879 29 100.0 32 ............................. TGGATNNNNNNNNNNNNNNNNNNNNNNNNGCG 983940 29 100.0 32 ............................. CGGCNNNNNNNNNNNNNNNNNNNNNNNGACCA 984001 29 100.0 93 ............................. GCTANNNNNNNNNNNNNNNNNNNTATCAATATGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGC 984123 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 984184 29 96.6 0 A............................ | A [984210] ========== ====== ====== ====== ============================= ============================================================================================= ================== 45 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //