Array 1 2264-4060 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHS01000013.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2086 NODE_13_length_130636_cov_5.1724, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2264 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 2325 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 2386 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 2447 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 2508 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 2569 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 2630 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 2691 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 2752 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 2813 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2874 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2935 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 2996 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 3057 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 3118 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 3179 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 3240 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3301 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3362 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3423 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3484 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3545 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3606 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3667 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3728 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3789 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3850 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3911 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3972 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4033 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20742-22481 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHS01000013.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2086 NODE_13_length_130636_cov_5.1724, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20742 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 20803 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 20864 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 20925 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 20986 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 21047 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 21108 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 21169 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 21230 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 21291 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 21352 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 21413 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 21474 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 21535 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 21596 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 21657 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 21718 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 21779 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 21841 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 21903 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 21964 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 22025 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 22086 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 22147 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 22208 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 22269 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 22330 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 22391 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 22452 29 100.0 0 ............................. | A [22479] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //