Array 1 1478858-1478174 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP007726.1 Neisseria elongata subsp. glycolytica ATCC 29315 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=================================	=================================	==================
   1478857	    33	  97.0	    32	.C...............................	AGGGTCAGCCAGGCCCGGCTGCCGATGATGCG 	
   1478792	    33	  93.9	    33	GA...............................	ACAGAAGAGAAGCCCGACAGCAGGGCTGAACGT	
   1478726	    33	 100.0	    32	.................................	GGTATTTTTGGCATATTGCCTGCCGCGTATCA 	
   1478661	    33	 100.0	    33	.................................	TTTGCGACCGACCGAACGGCATTCCTGCTGCTC	
   1478595	    33	  93.9	    31	AA...............................	CTGCTTTGCCTGCTCGATAAGGTGGCTTTTG  	
   1478531	    33	  93.9	    31	GC...............................	ACCTGCTCGTACACATCGGCGTTCAGGGTTT  	
   1478467	    33	  97.0	    33	.A...............................	CGCGGTTTGCCGGTTTGGGATGGCCGCCGTTTT	
   1478401	    33	  97.0	    31	.C...............................	CCCGAACGTCCAACAGTGCAGGTTTTGGCCA  	
   1478337	    33	  93.9	    32	AC...............................	TCTCAATAAAGAACTGGCTGATCCGCTGCGCC 	
   1478272	    33	  90.9	    33	A...............T........G.......	CTCCTAGGGTTGGATGATGACGGTGGTGGTGAG	
   1478206	    33	  93.9	     0	.......A.................G.......	|                                	
==========	======	======	======	=================================	=================================	==================
        11	    33	  95.6	    32	TGCAGCCGCCTTCGGGCGGCTGTGTATTGAAAC	                                 	       

# Left flank :   TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCAGAAGGGAAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCGCCCGATCAGTGGGTCGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCAGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCTAAGCTGTAGTCCTCATGAAAATGCGGCAGGGTTAGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTAGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGACGGAACAAGGCTTTTAAGAGAGGC
# Right flank :  GATCGCCACCTCCTGTTTTGAAGAGGTATTTTGATCTACGGCGTTCAAACAGGCATAGCCAACAAAATATCCACGCTGGAATGAACTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAAATGCCGTCCCTGCATTCGCTGGAACATTTGATGGCCGAATTGTCGCGCAACCACTCCGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAAGTGTTGCAACTGATTGAAAATACATTGAAAGAT

# Questionable array : NO	 Score: 8.36
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TGCAGCCGCCTTCGGGCGGCTGTGTATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.00,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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