Array 1 139271-141008 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLT01000007.1 Salmonella enterica strain SW1 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 139271 29 100.0 32 ............................. TTTTTTTCGACGTCCCGGAGAGTTATTTGCGG 139332 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 139393 29 100.0 32 ............................. ATGGGATCGTGACTCACTGGCATCTTATGGAC 139454 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTGGCTGG 139515 29 100.0 32 ............................. GTTATTGATAAATCTCCACGGCACCAACCAGA 139576 29 100.0 32 ............................. ACCGGCTGCGCGATCGCCCTGGGTGAATTCGT 139637 29 100.0 32 ............................. AGATTGTGAGACAGCTTGATCCTGGTGCTCGT 139698 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 139759 29 100.0 32 ............................. CTACCACCCATCAGTACGCCACGCTGATAAAA 139820 29 96.6 32 ............................T GAGATTTACGCGCTCGTTGAGCTGCTGCACGT 139881 29 100.0 32 ............................. TGTTTCCCGATCACGTTGCTGATACACCAGGT 139942 29 100.0 32 ............................. CGTAAAAATCGGGCTGATGGGCGCCAGCCACA 140003 29 100.0 32 ............................. GGGATCCACTGCGCGTGGCGTCCTGGTACACA 140064 29 100.0 32 ............................. CGTAGCTATACTGATAATTCATCAGCACAGAC 140125 29 100.0 32 ............................. GGCACTCTTCAGGAAAGCAGCGCCTTCAGGGT 140186 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 140247 29 100.0 34 ............................. GAAGAGCGTGATCTGCACTACTCGTCTGTGCTGC 140310 29 100.0 32 ............................. TCGAATTGTTCACGTCTGGTCATATAATTCAC 140371 29 100.0 32 ............................. CAGTGCACCAATAGCATTACGATTCTGATAAC 140432 29 100.0 32 ............................. CTCGTAACAACGCCGCCACCCGGTGAATTTTA 140493 29 100.0 32 ............................. ATTCTGTCTCTTTTGTGCGGAGCGCCGACGCC 140554 29 100.0 32 ............................. CGTTGTTAACGGCAGCCTTATCTGCTTTACCA 140615 29 100.0 32 ............................. CAGTTATTTGACAATTGGTACTGGCATTAAAT 140676 29 100.0 32 ............................. TTGCTTATTAATGAGTTTGCGACGGTGTTAAT 140737 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 140798 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 140859 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 140920 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 140981 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================== ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATTCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 157591-159145 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLT01000007.1 Salmonella enterica strain SW1 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157591 29 100.0 32 ............................. GCAACGTCGTCATTGATGAAGCCGCGTTCCAC 157652 29 100.0 32 ............................. CGTGTTTTCGCCCCGGAGACAATACCAAAATA 157713 29 100.0 32 ............................. GCACCGCATGACATGCGATGAATACCGTGATA 157774 29 100.0 32 ............................. AGAAAAACCTTGATAAAACCTTTCCTAAAACG 157835 29 100.0 32 ............................. GATGACCCGGAGGCTTACGAGGGTTGCGCGGC 157896 29 100.0 32 ............................. ATATTACCGGGACCGGATTTGACGGTACCAGC 157957 29 100.0 32 ............................. TGACTGCGCGGACCGGGCCAGCGCGTCGATTT 158018 29 100.0 32 ............................. GGTAATTATGCCATTGTCGTCAGGGGTAAAAC 158079 29 100.0 32 ............................. CCTCTTTTAGTCTCGGCCATGAATCGTTATTA 158140 29 100.0 32 ............................. TCACTGATATTAAATAAATACTATATTTTACA 158201 29 100.0 32 ............................. CAATGAATTTGCTCCGGAAATAGATAAAGCGC 158262 29 100.0 32 ............................. GGCGCACTGGCGTATAACCTCTTGCGTGCCGT 158323 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 158384 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 158445 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 158506 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 158567 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 158628 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 158689 29 100.0 32 ............................. GGCTGGCATCAGATCTCTAAAGAATATGACAA 158750 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 158811 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 158872 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 158933 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 158994 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 159055 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 159116 29 96.6 0 ............T................ | A [159143] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //