Array 1 28814-27591 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQO01000105.1 Ligilactobacillus agilis strain UMNLA6 agilis8I2S2LR1contig91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 28813 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 28748 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 28682 30 100.0 36 .............................. CATTTTTCACGCGCTGATGTGGCATGTGATATTATC 28616 30 100.0 38 .............................. TTGAATGGTTGACCTGGAAACCCCGCACATTTGTTCAG 28548 30 100.0 36 .............................. TTCTTTACGTATGTAAAGTATAATGGGTTATACTTG 28482 30 100.0 35 .............................. TGTAGTAGCCCAATTCTGATACTTTCTTTCTAAGT 28417 30 100.0 37 .............................. AACGATTTTAATAAAATTCAAGAAAACATGGCTCAAA 28350 30 100.0 36 .............................. CATGATTTTGGCTACGCCTGGATATTTAACATAGCC 28284 30 100.0 36 .............................. AAAATTAAGGTGGTCAATTGATAGAATTACAATCGT 28218 30 100.0 35 .............................. GTAAATAGGCAACCTCTCCATTTTGCCGTTTTCTT 28153 30 100.0 39 .............................. CTGTTGCCCCATCGGAAATGGTCTACCGCTCTTAGACTT 28084 30 100.0 37 .............................. TATTTTAACGTCTGACAGCTCAAAAAAGACAAAACGC 28017 30 100.0 37 .............................. CCGGATAACCAGGTGGCTGAGTTAATGCGAGCTGTCG 27950 30 100.0 37 .............................. TTTTTAAAACCTCCTGTTACAATAGAAGGGCAGAATT 27883 30 100.0 35 .............................. AGCCTTTGGCTTTCGTGCGATATAGCTACGATACT 27818 30 100.0 35 .............................. GCAGCAACCAGAGCGCTGACCAACTCTGACTTACC 27753 30 100.0 35 .............................. TACGACATGGATGGGACGTTTGGCATGTACTGGTC 27688 30 100.0 38 .............................. CCATAACCAAACTGACGCGTATGTCTTAAAGCACTCTC 27620 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : GATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCTTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATAATCGGCTAATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAATTCAGTCTAGCGGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3719-2532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQO01000110.1 Ligilactobacillus agilis strain UMNLA6 agilis8I2S2LR1contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3718 28 100.0 33 ............................ TAGGGGTATCGACTTTTTTATCTATAGGGGGTG 3657 28 100.0 33 ............................ TTATTCCGGCTGAAGACCTTTTACTTGATGAAC 3596 28 100.0 32 ............................ ACAGATAAAGAAGGCGAAAATGAAAACTTTGA 3536 28 100.0 33 ............................ TTGAGGCGGTGACAATTGCCTTACTACGTAAAA 3475 28 100.0 33 ............................ TTGGTCAAGGTAAATTAGACGGCAAACTGTTTG 3414 28 96.4 33 T........................... TGATAAGTCAGAAGAAGTTCTTAAAGTAATTAA 3353 28 100.0 33 ............................ TTAGTAATATATTGGCAATCGGTCCGGGGATAG 3292 28 100.0 33 ............................ AAATCAAAGACACGAAGTATATTGAAGATCCGG 3231 28 100.0 33 ............................ TTGACCGGGCTAATGAAACTTCACAGAAAACAA 3170 28 100.0 33 ............................ TTGTAATCCATTGGATCAGGATCCTCATCAGCT 3109 28 100.0 33 ............................ CACATTCCAATTCTGTTTTTGAAAGGCTGTCGG 3048 28 100.0 33 ............................ TAGTTCTTCAAGCAACTTCACACCGTTGTTTCC 2987 28 100.0 33 ............................ TATAGTTATGAACTTCTTCCGCCTGTTCTGGTT 2926 28 100.0 33 ............................ TAGTGGTGAGAGGACTCTTACTACAAGTGATTG 2865 28 100.0 33 ............................ TCGTACAAGTCATCGTTATGCTGACCGAACCTA 2804 28 100.0 33 ............................ TAATTTGTTGAGCATTAGATACTTCAGTTACCG 2743 28 100.0 34 ............................ TAATTTTTTGATTGTTTCTTAATGATCTTGGTTA 2681 28 89.3 33 ........T.................TA ACTTCACTTTCCTAGAGTCGAAGAAGAGCCATA 2620 28 100.0 33 ............................ CATATGTGCAAGTGTTTGTAAACACTTTTTACT 2559 28 85.7 0 ..............G.......C...AT | ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.6 33 CTTCTCCCCACACTAGTGGGGGTAATCC # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTATATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : GAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTATTGTGATGGGTTAGATGTAATTGAGGAAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.40,-11.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 65876-65250 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQO01000050.1 Ligilactobacillus agilis strain UMNLA6 agilis8I2S2LR1contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 65875 30 100.0 35 .............................. TATTATCTTCATTCTCTGATTCTAAGTGAACAATT 65810 30 100.0 36 .............................. ATTTTTGACCCCGTGAATCCATCCCAACCACCATTT 65744 30 100.0 37 .............................. TGCGCCAACACCCGTTGTTAGCTTCAAAAAATTATAA 65677 30 100.0 36 .............................. ATAGCTTTGAAGAACTGTGTTAGTTTCCATTGGAAC 65611 30 100.0 38 .............................. GAACCTTGCTTGATGGATTAACATTACTTGACGAAAAA 65543 30 100.0 35 .............................. CATGCACAGATTATGTATATTGCTAATGATGTATT 65478 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 65410 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 65344 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 65279 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGGTAAAGTTTCATAGTGTTTTAGGGTGTTATAATCGTTGATATATCAAGCTTTATGTTTTATAAACGTTTTGTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAACAATTATAATAACTTGCCCTGGTGAGTATCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : ATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 68300-68458 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQO01000050.1 Ligilactobacillus agilis strain UMNLA6 agilis8I2S2LR1contig3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 68300 29 100.0 36 ............................. CTTACAGGAGGTCAAACTTAACTCTGAAACGGTTTA 68365 29 100.0 36 ............................. GAAAGACCCGTTACGCAACCTACTCATCTTCAACAT 68430 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 41 CTTTACATTCCTCTTAAGTTAAATAGATC # Left flank : CTTATTATTTGGCTGATAGAGTCGGATTGGACCCAGCAGATGAAAACCTGCTTCCCGCCCTTAACTACTCATTTGATTACCAGCTAAATTCAACGCACGACCGCTTCACCCAGCTATTAGCACATATCCACTTGAATCACCAGGATTTCACCTTGGACTTATTAAAAATGCCTGAACTGTGCTTCATTACTAAGCACCGCTGCAAGGAAGTTAAGGTGACAGACGAGAATAGTGAATATTTTGGCCAAGTGATGCAAGAAGCTTTACCTGACCCCGAAGCCGTCTACCTAGATCCAAATGAAATTGCCTATAAGCTGACCCCCGAGGATATGCCCTTAGTTGAGTGGACCCTCAATTTCGAGCCCCTCGACACCTATGAAGAATTGATTAATTACTACCACAACGATAACTAACTAAACCAGCCTATGATTGAAACGAGAGCATTCAATCATAGGCTGGTTATATTTATAGCAGCATTCTCAAGTAGAGGCACCTAATAT # Right flank : CTCTACACTACCAAAACCCTGTACCACCAACTAGTTTTCACATACATTCTGTCTATCACCAAATTCCACCCTCAGTTATATATTACTTTTTTCCCTAAATCCTTTCAAGGCCTATAATATCAACCTTTTTATAGTCTGTCGATACCAGTACTATTTCACCTTATCTTAGGTCGACAGATGCCAGCACTCTATAACAAAATGTAACTAGTAAAAAATGTACTTCACCACAACACTCCATATGCAAACAATTTTGCAGCTAAAATTTCTTACGAGAAAAAGTTCAGTAAACTAAGAAGCATGATGACGCTTATCCTAAAAGCATTCAGTACAAACCATTGAATCCAAGCATTTGTATCGGCATAAATCCCCACTCCATGGGGTTTTAAAGTCCGGCTAATATATGGAGCTGTAATAAATGGAATTATTAGTGCTAACATCTGATATCCTGCATTATACAAATAATTCCGGATAAGTTTCATAAATTTTTATCCCTCAAATTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTCCTCTTAAGTTAAATAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //