Array 1 359852-359602 **** Predicted by CRISPRDetect 2.4 *** >NC_010546.1 Crocosphaera subtropica ATCC 51142 chromosome circular, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 359851 37 100.0 35 ..................................... TTGTCAGTCAGTATTGCTACTAACAAAACAAAAAA 359779 37 97.3 33 ...................................G. CATTATACATTCCGTGTGCTATTTGCTGTGATG 359709 37 100.0 34 ..................................... GTCGTATAAACCACCAACACCTTCAAGTGTGTTA 359638 37 83.8 0 ...................T........C.TT.GT.. | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 95.3 34 CTTTCTCTTAACGGAGAACCTAGTTGAATGGAAACTT # Left flank : GATTCGTTGGCACGATTTAGACATTTATGACTATCCGAAAGAAGCAGATAAATTATTAGATAAAATCTATCCCATTACTATCTATGAAGAGGTGGCTGAAGCGTTAAATATTCCCTTACCCAGTAATAATATGAAAAAGGAAACGAACACCGCTTTTATTGATGGGCGATCGTTTGATCCTAGTAATCCGGTAGCGTATTTGAATCAATTTCCTATTCGTGCCAATGGTCCTCAGATTTTTGGGTTTGTTTAATCCCCCCAACCCCCCTTATAAATGGGGGCAAATAGGAGACAGGAGTTCGGAGGAAGAAACAATGATCCACGCAGTAGGGAAAATGGCTAAAAACCGCATTCTTTCGTCGACCTGCGTCGATGCTTTACCTGGCCTGGATTTGAGGGTTACGAGTTGTCGAAGATTGTTGAGTGTAGTATGATGATTACATGGGGTGCGTGGATTTGTAGTCCGAAACCCGCTCTGGGTAAAGGCTCTCAGACGGACT # Right flank : GTAGTGAGTTCTTTAGAACGAGAAAGCTAGTCATCATTAAAGCTAAAGCTTTAACTACGAACTTTTTTATTTTAAATAAAAACCACCCACTAACCTAAAAATTAGTGGGTTTTCAATTAAGAATAAGGGTTCTACCGAACTTGTCATGTAAATTAAAAAAATAAAAACGTGTTTTTGAAAGCATAAAGACAAGAGAATAATAGCCAAAAGCTTTGTCAGGGTTGCTTTTAAGGATATTTGATGGTTGAATAGGTATTAGAAAAAGAATGCTATTTTAAGTTAAGTTACACTAATGCCGTCAAATTCTCAACTAAACTTAATGACAAATATTCTTCAATTAGAAGGATTTACTGTTATGGATTATCAGTTAATCAAGGGAATGGGAATAGTTTTGTCATTAGAGAAAGTAGATAAAAAAACAACTTGTATATACTGTGGTTCTGTCACTAGAAAACTACATCAAAATAATGAACTAACTATCAGAGATTTATCTTGGGGAG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTCTTAACGGAGAACCTAGTTGAATGGAAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 809864-810664 **** Predicted by CRISPRDetect 2.4 *** >NC_010546.1 Crocosphaera subtropica ATCC 51142 chromosome circular, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 809864 36 100.0 40 .................................... TCCCATTGGTTGTGGCAAAGAATTCTCTGAGTTAACCCTA 809940 36 100.0 42 .................................... CTATTATACCTGTAGTTGTTGTCATGAAGTTTTCCCCGATGA 810018 36 100.0 42 .................................... AAATATCGATCGCCTTAAGGCAACGAGTTGGTTCATCAGAAT 810096 36 100.0 43 .................................... TTACCTACATATACAGCGTAATGAGATAATGTTCCCAGTGGAG 810175 36 100.0 42 .................................... TCGAGAGGCCCATTTATTTGCACTAGGATCAAAGATTCTAGA 810253 36 100.0 38 .................................... TCTCCTTGTCCCCTTATGCTCATGATCGCCTTTCCTTG 810327 36 100.0 43 .................................... TAGAACAATTGAGATAGAAGTCCCCAATTTAGGAAAACGCATA 810406 36 100.0 36 .................................... AGATCTTTATACCTCGAATGATTAGTTTTCGATTAT 810478 36 100.0 40 .................................... CAATCTATTAAGATTGCCTTTTTTAACTTTTTGTTTCAAT 810554 36 100.0 39 .................................... TTCATTAACGATGAAGAACAAAAGGAAAAATCCTTTGAT 810629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 100.0 41 GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Left flank : AATACGTTAAATTGTGTTAGTGTTCAGTTTCCTGATCCTTGGTTTAAACGCAGTCATAAAAAAAGACGGGTGGTACAACCCAGTTTAGTCCAAGCGATCGCACATTATTTAGTTACTAATGGTTCTGTATTTTTACAATCTGATATTAAAGAAGTTGCCCAAGAAATGGGAGAAACTTTTTTAAATAATAGTTGTTTTCAAAAGCAACATCAAGAAACTTGGTTAGCTGATAATCCTTTTCCTATTGCGACGCAAAGAGAAATCGCAACCTTTAATAAAAATGAACCCGTTTACCGAATGTTATTGAAAAAAATATAGCAGTTTACATACTTGTGAGGTGCAAAGTTTTCTAGTTTTAGGAGTCACCGAGTCAGGGGTCAGGAGTCAGGAGTCAGGAGTCAGGAATTTAATTTTAGGTGTATCTTATGAGTTTAGGAAACACTATAAACCCATCACAATATAAATAATGCGATGGGTTATAAAAGTAATACCAATTTTAA # Right flank : GGGTACTCGCTACAGCCCCTATCCTGTCTAGAGTCTAGAGGCGGTTTGCGAGGGATAGCTTTATTGTAGTCTTAGAACCAGAAAAAGTCCTCCGTAAAATCCCCGAAATCCGCATCAGGTAAGGGTGCGAGGGTTAGAACGAAATCATGAGGGTTACAGAGATTTTGCTTATCCCTCGCAAGATGATGATACAAAATCATCTCAGTTCTCAAAAATATGGTATTACAAATCAAGCAGAGGAAAGCGACGGGTAGGACGATCATAGTCTCCTAAATTGTAATCTGTATCTTGATAAGCATCATTTAGTTGTCTGACTCTGGTTTCATACAAATCTAAGTCAAAATTGCTAGACTCTAAAGAAGGAGACGGTTCGCGATCAGGAAACTCACCACCGAGTCCCCAGTTCCAGTCATCAATGGTTCTCGGTTCAACTCCTGTTAAATCTTCACTAGAAGTGGTTGCTAAACTGTCAAAATCAGAAGAACGCAAAACCTGAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 1203544-1203863 **** Predicted by CRISPRDetect 2.4 *** >NC_010546.1 Crocosphaera subtropica ATCC 51142 chromosome circular, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1203544 36 100.0 34 .................................... GACAAAAGCTAAGTTCAAAGATACTCCTGTTAGT 1203614 36 100.0 36 .................................... CTAATCCTCGCAGTGGTAGAGGTAATCAGTCTAATT 1203686 36 100.0 36 .................................... AAAATCGATAATCTGATCTAACACTGGCCTATTTAA 1203758 36 100.0 34 .................................... GAAAAATGATGAGAGTATTGCGTAAGGCACTAAA 1203828 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 100.0 35 ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GTCCTAAACGGTGGCGTAAAGCTTACAAACTTCTAGAAGGTTATGGTGAACGCCTCCAATACTCTATTTTTCGCTGTTGGCTGAGTCAACGAATGCGAGAAAAACTCCGTTGGGAATTAGAGAAAATTCTCACCACTGAAGATGATCTTATCCTCATTCGTCTTTCTCAACAATGTGTTAGAGATTTACCAAAATATAACCGCTCTAATACTTGGTTATTGGATGAAAAGGGATTTCGGGTAATCTAAAAATGCAAGCACCTCTGATTGTTTCTTTTTTTCTGTCATGCCAACTGCTTCTAATTCAGAACCTAGAAGGGTTTGACAACTTTTTAGAACCTTCAAGGTGCTTGCAAAATGCTGTAACCCTTTTCTGATGATGTTTTTAGCTAACGGGTTCAACTCTGAACGGGTCACTTTTAGCCAGTCCCTAGCCATTTTGCGAAGGTGCTTGTAAAATTGATTAAGAGCGTAGATTTATTAAGGCTTTCAGCCGTCGCT # Right flank : CAATAGTAACGCTTCAGCTTAGTAGATCCCAATCTAATGGCCTAACCTTTGACAGACCGTACTCCTTATCTACTTTTATTAGAGTATTGGCATAATGAATATGATAGAAATTATCGGCATGGGCAAGCAGAAATAGTGGGGTTTCGTAACCAACTGAGCGATCGCATGACAACTAACTTTTATAACTATCTAGAGGCAAATTTACCAAAAATCTATCAAAAAGCCCGTAAATATGTACAAGTCAAATCAGGTTTAAATAAGTTTCCTCAAGACTGTCCTTATACGTTACAACAATTATTGGATGAAGATTGGTTGCCCAAGAAATAGCTAGAAACTAATCATTTCTACGATGTAAAGTCACTTGTTGTAACTCAGTGAAATTAGACACTCCAGCGCAGAAAGTAGCAATTTTGAGGGTTTCTAGTAAGATTGAGAACTTATCATAAACTGCTTGAGATTGATGGGTAGCAGCATCTAATAAAGGGGCTGCGCTGCCTACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 3921611-3921434 **** Predicted by CRISPRDetect 2.4 *** >NC_010546.1 Crocosphaera subtropica ATCC 51142 chromosome circular, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 3921610 37 100.0 32 ..................................... TGGTAATGCTTGTTTGAGGTATATTTTCCATC 3921541 37 100.0 34 ..................................... TAAGAATCTGGAATCAAAACCCTGTCATTGTACT 3921470 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTCACAATCTATTTTGGTTAATGAGATGGATTGAAAG # Left flank : TTTTATAGGGTAGGTGCGCTCCCAGCAATAAGTGGCGTGGGTTTACCACAGCGATGGCTACTGAATCACCTCCGAGCAAGGAGGAATCCACTTATTTTTTCTTACTGATGACGGGATAAAGCATGGTTAAAGGCATAGTTAGGTTTATAGATATTAAGTAGATTGAAAGCGAGTCCAGTTACGTCCTATAAGATTAACTCATTTTAGAGTTCGCTCTCAAAATGTTTGATTCTGCAAGGGCGCAGGTGTGTTGCTGTAATCTTTACTGAGTCATTCTAGACCAAGATGAAATCCTTGCTTAATCTTAGTTTGAGGCGTGTAAAAGCAACTCTTTTTCTCTAGTTGTCTAGCGCAAAGCTTGAACCCGTTGTTAGATATAGGTTGTAGCACTTCTCAGTCTTTATTTTGTTTAAAGACTGTAGCTGAAATGAACTTTAGAGTTTCATCCAGCGCAAATAGTCAGCAAAAGACCTAATACATAAGGTTTTTGGGCTTCTGTC # Right flank : ATTTTTTACCATGATCTAGGATTAGCTTCAGTAATAAGCACACGACACATAATATGTTACCGATGACAAATAATCTGTTAATGTACAACATAAAGTCACAAAATAGGCTGCAATGCTTGTTATGACTAGTATGGACGTAACTGGACTCGAACCAGTGACCCCATCGATGTCAACGATGTACTCTAACCAACTGAGCTATACGTCCGAACAAGTTTTTACTATAACACAGTATTTACCGAAAACGCAACCAACCGATCACACTTATTCCTCTTTGTATTAGTCTAGGAAAGATACAATGAAGAAAAAGTTGAGAGTCTCAGCTAGATAATAATATACAGTTAATCTTGCAACCTTACCTATACTTTAATTTCATTTTAAACTGGCTGAGAATTTTCCCAATCTCTCAACTTACTTTAGGGTTTCCAAGGTTTATTGCCAAAATTAATGAAGTTGATGATTTTCATTGCTTGGTTTATCTTTGGAATGAATTTTGTTATTCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCTATTTTGGTTAATGAGATGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //