Array 1 379576-377958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOD010000006.1 Cronobacter malonaticus strain MOD1_GK796 cmalGK796_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 379575 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 379514 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 379453 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 379392 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 379331 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 379270 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 379209 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 379148 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 379087 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 379026 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 378965 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 378904 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 378843 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 378782 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 378721 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 378660 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 378599 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 378538 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 378477 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 378415 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 378353 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [378348] 378291 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 378230 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 378169 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 378108 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 378047 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 377986 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 407232-406348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOD010000006.1 Cronobacter malonaticus strain MOD1_GK796 cmalGK796_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 407231 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 407170 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 407109 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 407048 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 406987 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 406926 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 406865 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 406804 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 406743 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 406682 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 406621 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 406560 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 406499 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 406438 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 406377 29 93.1 0 ...........TT................ | G [406356] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //