Array 1 5400941-5402558 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNWR01000001.1 Actinoplanes brasiliensis strain DSM 43805 Ga0197474_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5400941 29 96.6 32 ............................C CATAATTCGCGCCTCAGGTACACATTTAAGGG 5401002 29 100.0 32 ............................. GCCGAGCAGCGCGTCCGGGTCGCCAGGCTGGC 5401063 29 96.6 32 ............................C GGCATCGTGTGGTACTACCGGGACAACGCAGC 5401124 29 96.6 32 ............................C CATCGGGTGATCGCCCCGGTTGAGGCGATGGG 5401185 29 100.0 32 ............................. ACATCGGACCCGTCTGATGAGCTCCTGGGAAA 5401246 29 96.6 32 ............................C TCGGGGCTGGAGACAGGTTGGTTCACGGTGCG 5401307 29 100.0 32 ............................. TGCTGCTCGACAGCAGCGTCGGGTCGATCGCC 5401368 29 100.0 32 ............................. GAGTACCCCGACCTGCCGTGGATGGAGCCGCG 5401429 29 96.6 32 ............................C GAGCGCGGCCAGCAGCCCCCGCGACTTGTTCA 5401490 29 100.0 32 ............................. TAGTGCGTCAGGAACTCGTCCAGGGGAATGGA 5401551 29 100.0 32 ............................. CCTTCATCTACCTACCCCCGACCAGCCCCATC 5401612 29 100.0 31 ............................. TCGCCGCCCAGCGGACAACTCCGTCGGACTC 5401672 29 96.6 33 ............................C TCGGCAACCGCGACGACGAGATGGCCCGCCACC 5401734 29 100.0 32 ............................. ACTGGGGCCTCTACCTGGGCGGCTGGGGCCTC 5401795 29 100.0 32 ............................. TACGGGCCGTTGCCGGGGTGGGCATGGATGGC 5401856 29 100.0 32 ............................. TGACCACCGCCCCCGCGACCCCCAGCCGGTTC 5401917 29 96.6 32 ............................C GGCGGCGGCATCACGGCCGCGCAGTCGACGAC 5401978 29 96.6 32 ............................C TGCGGCTGCTCGATGACCCGATGTACGCGATG 5402039 29 96.6 32 ............................T GACCATGGCCATGCAGGATTACGAGCTGGACG 5402100 29 96.6 32 ............................C GTGACCTGCGCGAGCCTGCTCACCCTCACCGA 5402161 29 96.6 32 ............................C GTGCCGGCCATGAACGGCTCGCCGGACTCGGC 5402222 29 100.0 32 ............................. TCTCGATCGCGCCTACGGTCCCGTACATCTGC 5402283 29 96.6 32 ............................C GGGAACAACTACATGCAGGGCGCCCACCTGTG 5402344 29 96.6 32 ............................C GTGCCGGACCGCGGGTACAACGACGTGCCGCA 5402405 29 100.0 32 ............................. GAAAAGGACCTTAAGGTTGCCCTTGCGATCAA 5402466 29 100.0 32 ............................. GCGTCGAGGGCGCCGGCGACGACGGTTTGGAT 5402527 29 93.1 0 .........................A..C | CTT [5402549] ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 CTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : AGCCCCGAGACACCGTCGTTGACCAGACCCGAGGACAGCCCCGACAGGATCACCACCAGAACCGCGACAAGGGCGACGACGCTCCCTATGAGCGTGAACCGTCGGCGCGCGAAGCGAAGCTCGCGCAATGCCAGGAACGTCGATCCTCCTCCCGGGTTATGACTCGATTGGCTGACCGCGACGGCCACTGCAATGCTGTTGTCGTAGCGCAGTCGGCGGCGGCATCGCGGCGAGCGATCACCCATGCCCCGCACCCCGACCGTCACTTGCCATCCGGCGAGGTGGCATTCGACCTCTTCGGAAGCACTCCGACGCTGAGCTCGCGTCTCACCGACTTCGGTGCAGTCAGTCGGCAAATTCATGCGCCGGCGCAAAGCAAGGGCGGACAAAAGCGCCCACGCAAAAGTCTGGTGGGCGCAGGCGCCCACCAGACTAGAATCGACGCGACACAAGTGAACAAAAACCAGGTTCTTGATCTCTAACCCCGCAGTTCAAGAAGC # Right flank : CGAACCGCGTACGCCGGGGATTTCGTCCGCGCGGGCCGCTCATACCGGTCCGTTTTGTTTCGCTCGGGTGAGGGCGCAAGCTAGCCCTTGCTTTCCTGCCTGGAGGGCGGCGGACGTGACCGTTCCGGCACAGGCAGTCGTTGCGACACATGAGCAGGTTGAATGCCGGCGGTGATGGACCTGGCCGAACCCGACCACCATCCCGGCGCTTTCGTGCGTCCCCGCCGAACAACACGACGCCTGGCAAGTACGGCTATATGCCGCGGAGGTCGAGTTCGCCGCACGGGAGTACGGTCTTGAGCTGCAGGGCCGCGTGGGCGGCGGGAGGCGCGTACGACGTTCACCGTGGGTCTCAGGGCACGACGATGACCGTCCGTCCCGCGGCGTGGCCGGCGGCGTTGTGTTCCTGCGCGGCGGACGCGGCGGCCAGCGGGAACGTGTGCTGGACAGGGATTCGCAGGATGCCCTTGGTGTACAGGGCAGCGGCCTCGCGGAGCGCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5414130-5413065 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNWR01000001.1 Actinoplanes brasiliensis strain DSM 43805 Ga0197474_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5414129 28 100.0 33 ............................ CTGCTCGAACGACCCGCTGTAGCCCTTGCGGAG 5414068 28 100.0 33 ............................ GTTTTGCTCCATCTGCACAACCCCCCGCGGGTC 5414007 28 100.0 33 ............................ GCAGTCGCAGTGGGACATGGTCGACGCGATGGC 5413946 28 100.0 33 ............................ CGCTGAGGATGTGCACGGTCGGGGCCGCGCCGC 5413885 28 100.0 33 ............................ CGCCGCCGTCTGCGCCAGGGTGTCCGCGTTCGC 5413824 28 100.0 33 ............................ CACGCCGGTGCGGTTGCTGGCGCGGGTCCCGAG 5413763 28 100.0 33 ............................ CTGCTTGACGTGCTGCGGGTCGACGTCCACGTA 5413702 28 100.0 33 ............................ GGAGGCCACCGTGCCGCTCACCGCCAGCATCAA 5413641 28 100.0 33 ............................ CTGGGCGGCGGGGGCGCGCTGCGCCTCGGTCAT 5413580 28 100.0 33 ............................ GGTCAGCCATGAGCAAACCGGCCACACCCGGCC 5413519 28 100.0 33 ............................ GACGGCGAGACGCCGAAGGGCGCCGTCGCGGGA 5413458 28 100.0 33 ............................ CAGTCCGCCAGCAACCGGCGGAAGAAGGGTAAC 5413397 28 100.0 33 ............................ TCGGGCACGGCGGCCGCCTTCCGTCGGGGTGCA 5413336 28 100.0 34 ............................ CTCGATCACAGGCGGAGGGCTGAGGTCATGAGCG 5413274 28 100.0 33 ............................ CTGGGCGAACACCAACGCTGCTGCGACCCGCTC 5413213 28 100.0 33 ............................ TGACAACTGGCACTTCATGCCCCGGAGCGTCTT 5413152 27 96.4 33 ........-................... CGGGTGGGCCGTGTTCTCTTGCACCTGCCAGGT 5413092 28 92.9 0 ...C.......A................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.4 33 CTGTTCCCCGCGCACGCGGGGGTGCTCC # Left flank : TCCGGCTCTGGGACGACGAAGGCCTTGAGGTCGCCGCCGGTCGCAACTACGCCGACACCGGTGACGTGGACTTCTGATGATCGTCATCGTCCTCACGTCTTGCCCGCCTGGCCTTCGTGGCCACCTGACACAGTGGCTGCTCGAAATCTCCGCCGGCGTGTACGTCGGACACGTCAACACCCGCATTCGTGACCGCCTATGGGCCCGGGTAGTCGACATGGCCGGCCCTGGCCGGGCGCTTCTCGTGTATCAGAAGCACAGTGAGCAAAGGCTCTCTTTCGCCGTGCACGACCACCATTGGGAGCCAGTCGACTTGGACGGCGTGATGCTGATCCGTCGGCCTGGGGAATCGCCTTTCAACCCGGCCTTGCCTTCCGGCTGGAGCAAAGCGGCCAAACGTCGCAGATTCGGACGCCGCGGCACCGAGACAAGAACCCACTCCAGCAACCCGACTGAACAAAAACCAGACAGTTGATCTTCAGGATCCCAGTTCATCAAGC # Right flank : GCCGGAAGTCAGTGTCGACGGCGGCTGAAAACTGGTTCTGGTTCTGGCCCTCATCTCGTGATCGCAACTGACCCCAGGCCGTCTGATCAGCGGCTGAGCAGAACGCGCTTCCGGAGCAGAGCGAACCCGGCTCGCCCATACATCTGCCTTTTGAGCATCTTGATCCGATTCACGTTGCCCTCGACCGCGCCGGAGCGATGCGCCGCACCGCTGCCTGATGAGCTAGATCCACTGTGTACAGTTCCGACGGTGCGTCGATTCTGATCTTGGAATGGTCTTCCCTCACCTGGCACGCCTGGCGATCGACCGGGTCCAAGCTCAACCCACATCCGTGCTGCTCGAAGCCCACATTCGCACCACCGACGCAGACTGCCCGGCCTGCGGTAAGCCCAGCGCCCGGATTCACAGCCGGTACACCCGCCGAGTCGCCGATGCGGTGGTCGGCGCCCGCCGGATGGTCCTGAAACTGCTGGTCCGCCGCTTCTTCTGCCTCGCCCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //