Array 1 62890-62465 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEX01000015.1 Thermosipho sp. 1074 Ts_1074_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 62889 30 100.0 33 .............................. TTATTTCTAAAAACAGACTTAATTTTTAAGTTC 62826 30 100.0 38 .............................. ATGAAAACATCTGATAAATTTTCATCCAACCATTTCCA 62758 30 100.0 35 .............................. CAATTCTTCCTGTCGCGCATATAATCGACTTAATA 62693 30 100.0 36 .............................. TAAAATCTTCAAATGTTTCTAAAAATTCTCTTTTTC 62627 30 100.0 33 .............................. TCTGTAAATTTTAAATCAGCTGCTATATACAAT 62564 30 100.0 40 .............................. GTGTGTGGTGTTAAATTAATAAATTTTGCCATAATATCAT 62494 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 100.0 36 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTGTCTTTCAACAATAATTTTTTCATTATTTTTAATTATATTAAGTTTCATTTTCTATGATTAATTATGTGTTTTATTTACGTGAAGAATGTTTAGTTAAATTATTATAATATCATAATTATATTATTTTATATTAAACACTGTATTTTCTTTTATTGAATAGAAAATATCATTCGTTATGAACAAAACATAAAATTACGTAATATAAAATAAAATAATATTTAATATAATTTGTTAATTATAAACAAATTAAAATAAATTAACTAATAGGTTTTCCGTTTACATAAATTCATACAAAATACATTGTTTAATAAAATATCAATTGTAACCAATTGTAACGTTTGGGTTAACACAAAAAATATAAGGAATATTCGATGACCTTTTCCGTTAACAAAAAAGCTTGTATATGGCTTAAAATAATGTGTTTACTTTCAGGTAACTTCTAGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGATTTTTAATTG # Right flank : TTCATTGTGTGTGTGTACAAAAATCAAAGAAAATTATTAAAAAATCAAGTACAGAATAGAACAGATAATAGGAATAGTGAAAAACATATTCGGAGATAGAACTTTTTTATTTAAAATACCAAAACTGCGTGTATATGTAAGAATTATATTGTACAACTTGATAGAGTTATTCTAAATAATTTTTTATTTAATTTTGTGCAAGATACTTTATTATTCGAATGTATTTAGTTCATAGCTCTATATGCCTATTTGTTTTATATCTCTTTGTTTTTTGAACAGAATCTGAAATTAATTGACAATATCGCTTCTTTATATTAAAATAATAGAAAGAAAAAATTAACAGTTGGTGATATTATGAAAAAATTATCGACAAAAGAATATTTTACCTATTTTAAAAGTGAAAACTTTGTTTGGTGGTGGAACAGTGGCGATTGTCCACCACCTTTGTTGTGGTAAAAATATACTTGAGAGGACAATTGCCGGGCATTATCTGCCCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 61656-60821 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEX01000003.1 Thermosipho sp. 1074 Ts_1074_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 61655 30 100.0 33 .............................. TTAAAGAATTTATCATAAACTTTCTGTTCTAAA 61592 30 100.0 34 .............................. CAATATTGAATATTAAATCTTTCTACAAATATCA 61528 30 100.0 40 .............................. ACGACTGATTTCTACGTCTTTTTCAAAAACTTTAACTTCA 61458 30 100.0 39 .............................. AAAGTTGAAAGTTTATTCTTTTTTTTAGATGGTTTCATT 61389 30 100.0 37 .............................. TCAGTTAACGTTAAGGTCATCCTGGTAGGATTTAACG 61322 30 100.0 38 .............................. ATTCTTCATCAACTACATACTTGCTCACATGAATTTCA 61254 30 100.0 40 .............................. AAAGACAATAATGGGCAGTTCATATTTGACCCTAAAGACA 61184 30 100.0 34 .............................. AAGAATTATTTTTTTGATTTTCTTTTATAAATTC 61120 30 100.0 39 .............................. AACAGTTTACATATTTCACCATGATTTCCATAATATCTC 61051 30 100.0 37 .............................. CATGAAATCTTGTTTTTAGATATCTTTCCATATTTTC 60984 30 100.0 37 .............................. TGCCAACTGTACGTTTGGAACAAAGTCTATGTAGTAA 60917 30 100.0 37 .............................. CGCTCCCACCGCAGCACCTCCGTTTCTTCCATGCAAG 60850 30 90.0 0 ..........................G.TG | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 99.2 37 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : ATCTTTTAAGCATTATTTTTCTTTGTTTTTAATGATATTAAATTTTATTTTCTATAGTTAATTATATATTTTATTTATCTTAACAACAAATCATTTAATTATTATAATATTATGATTATATTACTTAATATCTAATAACATATATATCGCTTTTAAACAAAAATAATATCGTTTATTATAAATAATAAAAATAAAATTACGTAATGTAAAACAAAATAAAAATTAATCTAATTTGTTAATTATAAATAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTATTTAATAATATATTAATTGTAACCAATTGTAACGTTTAGGTTAAGATAAAAAATATATAAGATTTTCAACGACCTTTTCCGTTAACAAAAAGCTTGTATGTGGCTTAAAATAACATGTTTACTTTTAGGTAACTTCCGGTTAATCAAAATGAAAATATCTTGGTTCATAATAATTTATGAGGTTTTTTAATTG # Right flank : TAAAATTTTTATTTGAAAAAATTTTTTATTTTGTCAGATTTTTTTGTTTAGATTCGTAATTATAAATGAAAGGAGAGTTAATTGGGAGGGAATTTTATGTATGTTATTATGATTTACGATGTTAATAGAAAAAGGGTTTCAAAAGTTTTAAGAATTGCTAGAAAATATTTACGTTGGGTACAAAGATCTGTTTTTGAGGGTAGAATAACAGAGAAAGATTTTAATGAATTGAGAATGGAAATACAGAACATAATTGTTGAAAATGAGGATAGTATATATTGGTATATTTTAAAAAAAGAGTTTGTTCCTTATAGGCACTATATTGGTGAACCCAAATCAACAATTTCCAGTATTATATAGGAGGGAGTTTATGGAAACATTATATGTTTTTACAGATGGCGAAATCAGAAAGAAAAATAATGCGATGTATTTGATTCCAAAATCTGAAGAAAAAAAACCAATGATTGTTCCATTAAAAAATGTTAGTTCTATTATGATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 242305-241911 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEX01000003.1 Thermosipho sp. 1074 Ts_1074_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 242304 36 100.0 37 .................................... CGAAGGGGAAAATTTTTATAGTGCTTATTATTTCAAC 242231 36 100.0 37 .................................... CAGCTATTGTTTGAGAATTTTCTGGTTCTGGAATTAT 242158 36 100.0 34 .................................... TTAAAGGCACAATCTGGTTCCCTGTTGAATTTAG 242088 36 100.0 35 .................................... TATTATGAAAACGCAAATTACAAATATCAAAAAAA 242017 36 100.0 35 .................................... TACGAAGCAAGAATATCGCACAACGACAATCTTGA 241946 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 100.0 36 GTTTGAATTCCATTTTATGGAATTAGGTTTTTTAAC # Left flank : TTTCA # Right flank : ACTATCAATACTAAAACAAAAAAAATAAATTGTCAAGGACCGTAAATGCGTGTGTTAACGTTTTTTACTTAAAAAATTTTTAAATAAGTTTGTTTCAATGTTAGATAGTTGTTTATTGGAGAGTGTCGTGGATATTATATATTTTTGAGAAAAATAAGATTCGCGGATAGATTTTAGTTATAATTTAGTTATAATATATAATTGTCATTATTGGTTAAAATATCTATTTTTACAGTACCTATAATTTCCATTTTGGATAAATTTATTGGGATAATTAAAATTGAATCTGTATTTTTGTCTATTATAGGATTCATCCTTAAAAGTATATTATAAAGTTCTTTTTTTGGAACTTGGCAAATAAATACACTGTATTGAAGCCTTTGTCCATATTCTTCTAATATTTTTGATATTTTATTTCTTTTCTTATCTTTCTTTATATCATAGCTGATTATATATGTCATCATGAAAATCACTTCTTTACAATGAAAGGAGTATATTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATTCCATTTTATGGAATTAGGTTTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 52573-53415 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEX01000007.1 Thermosipho sp. 1074 Ts_1074_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 52573 30 100.0 34 .............................. CGAAGGGGAAAATCTTTACTACATCAACTATTTC 52637 30 100.0 41 .............................. CTATAACTCCCCGTCTTCTGTATATCGTTTCAATATTTCCG 52708 30 100.0 43 .............................. ATTTAATGGTTTTAAGTTAAAAAAAAAGACGGGGAACTATAAC 52781 30 100.0 33 .............................. TTTAAATCAATAATCAACATAACACCATTAAAA 52844 30 100.0 41 .............................. CAGAATAGAACGCAAGCATTGTTTTTGATTTTGGAATTAAA 52915 30 100.0 32 .............................. TTATATCTTTTACCATTTCTTGAATTGTTTCA 52977 30 100.0 39 .............................. AAGGGGAAAACTTTTATGATGTCAACTATTTCAATCACA 53046 30 100.0 36 .............................. AAAACAGCTTCACGCAAAATACTCGTATCCAAATGA 53112 30 100.0 37 .............................. GTATTTTCAACATCCTCTTTGCCCTCCCTAACTTCTT 53179 30 100.0 40 .............................. TCTAAAATATCGGTTGTTATAGGGTATTCGTGTGTTATTC 53249 30 100.0 40 .............................. CATTTATGATTTTTGTGAGATAATCTTCGACTAACATGTC 53319 30 100.0 37 .............................. AAAAAGTATTTAAACCAACAAATGGCCCCTTATAATT 53386 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 99.5 38 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTTAACATAAGTTATTTTTCTTTGTTTTTAATGATATTAAATTTTATTTTCTATAGTTAATTATATATTTTATTTATTTTAACAAGAAATTATTTAATTATTATAATATTATGATTATATTACTTAATATCTAATAACATATACATCGCTTTTAAACAAAAAGAATATCGTTTATTATAAACAATAAAAATAAAATTACGTAATGTAAAACAAAATAAAAATTAATCTAATTTGTTAATTATAAATAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTATTTAATAATATATTAATTGTAACCAATTGTAACGTTTAGGTTAAGATAAAAAATATATAAGATTTTCAACGACCTTTTCCGTTAACAAAAAGCTTGTATGTGGCTTAAAATAACATGTTTGCTTTTAGGTAACTTCCAGTTAATCAAAATGAAAATATCTTGGTTTATAATAATTTATGAGGTTTTTTAATTG # Right flank : TCAAAGGGAAATGATAGATATCATTTCACATAATTTGAAAAGAATATACACAAAAAACAGCAAAATTCCATGATGTTTCGATTTTTTTCTAAAAAAATGCACAGAAACAAAACAGCATGACTTTGGTAGAATATCAAAGCCATGCTGTTTAAAAGTAAATCTAAAATTGCGAATTATTTTAATATATGTCTTAAAAATTCTTTTGTCCTCTGATTTTTTGGTTCTTTAAAAATTTCTTCTGGTTTTCCTTCCTCTGCTATAACTCCTTTGTCCATGAAGATTATCCTATCTGCTACTTCTCTTGCAAATCCTATTTCGTGTGTTACCACTATCATTGTCATACCAGATTTTGCAAGATCCTTCATTACCTCTAAAACTTCACCTACAAGTTCTGGATCAAGAGCAGATGTAGGCTCGTCAAATAACATAAGCACGGGATCCATCATTAATGCCCTTGCAATGGCAACCCTTTGTTTTTGACCACCTGACAAATTATCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1780-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEX01000004.1 Thermosipho sp. 1074 Ts_1074_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1779 36 97.2 37 A................................... ACAACAGAAGCAAGTGACGCCATAAATAGCGAAGGAG 1706 36 100.0 35 .................................... TCATTCTCAAAATTCCCATACTTTCCTAACAAATT 1635 36 100.0 36 .................................... TTTTTATAACTATCCTTTGAGTTCTGACACTTTATA 1563 36 100.0 37 .................................... ACAACAGAAGCAAGTGACGCCATAAATAGCGAAGGAG 1490 36 100.0 39 .................................... ACCTGTAGGTGAATTTCATGATCCTCGCTATGGAAAGGT 1415 36 100.0 37 .................................... TAAGTGCCGCAAGTTTTGCCTTTTCTTGCTTATCCTT 1342 36 100.0 38 .................................... ATTAAGCAGATGCTTGACAAGTATGACAGAATAGATTT 1268 36 100.0 39 .................................... TCATACAAGAAAAAAAGCGAATACATACACGTTATTAGC 1193 36 100.0 37 .................................... CTGGTGGTCCTGTGACACCAGAGCTAAACATCTCAGA 1120 36 100.0 38 .................................... AGGACTACTTTCTGTTATCGATGCCCCAGTTTCAAGCT 1046 36 100.0 37 .................................... AATGAAAATCGCAAAGAAAAATGTTTGGGAATTAGTT 973 36 100.0 38 .................................... TTCTTCATAGGACATTTGGATGGTCGAAATTTTCATAC 899 36 100.0 36 .................................... AATGCGAAAATTGAACTTAATCTCTCTTCTCTTGAA 827 36 100.0 38 .................................... TCTGATTTACCAAAACGTCTTCCTGCTGCTATTGTAAT 753 36 100.0 34 .................................... CACAATGGCATATTGAAAATGCAATCGCAAAACA 683 36 100.0 35 .................................... CAACGGTGTCGAAATTTAGAAATGGCAATAATTTC 612 36 100.0 37 .................................... GCATTGCTATCGTGACTAAAATAAGATTTCATACCAT 539 36 100.0 34 .................................... AAATTTCATCAATGATATCCGTCATCAAAAATGT 469 36 100.0 38 .................................... AAAATTGAACTTAAAAAGGCGTATTTGAACTTTCTTAG 395 36 100.0 37 .................................... AACTTAAATCCATGTAATTCACTCCTTTCCGATTTTA 322 36 100.0 34 .................................... CTATTTCTGTAATCTGCGCGCCCTGTTAAAAAAT 252 36 100.0 36 .................................... AATAACAGTTATCGTCGCATCTGCAGGTTTTTGATT 180 36 100.0 36 .................................... TTGATAATAACACGACACCATCGATAATCTTATCTC 108 36 100.0 37 .................................... AAAACTCCAGTTGCGTCACAAACTTCTGCAGACATAT 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ======================================= ================== 25 36 99.8 37 GTTTGAATTCCATTTTATGGAATTAGGTTTTTTAAC # Left flank : ATTTATCCTCGAAAGCGTAATAAAAAAAATCAATTTATTAATTTTTCAAATAGCATGGCTTTGGTACTATACTGGAGCCATGCTATTTTTTCTTGTCTTGAGGTATTCCCTTTCTTGACATGCTTTAAATTGTTCATACTATATACTACTTTTTTATATCTTCCATTTGTTATATATTCCATGTGTATCGTTTTCTTAGGCTTTATTTTTTTGTATTAAATTTTTTTATATTAATTTATATACTTTTTTGTTTTAGTACAATTGTTATACGATAACACACGTAAACATTACGTATTTGAGATATATTTCTTCATTTTTTAGTTCAAATGTTTAAAGAAAAAAACCTTTTTGTTGGTTTTATTTGTTATTTCTGAGACTTTTTGGAATTCAGTATAAAAAAAGCTATGGAGCCATGTTTTTTTATTAATTACAGTATAAGTAGCCGAAATTCTATATCAATTTTTAAACATAAATATTGATATCAAACAAGTGTAGTAACA # Right flank : A # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATTCCATTTTATGGAATTAGGTTTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //