Array 1 93724-92108 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTO01000003.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4343 NODE_3_length_194559_cov_2.14503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93723 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 93662 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 93601 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 93540 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 93479 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 93418 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 93357 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 93296 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 93235 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 93174 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 93113 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 93052 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 92991 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 92930 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 92869 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 92808 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 92747 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 92686 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 92625 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 92564 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 92503 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 92442 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 92381 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 92320 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 92259 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 92198 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 92137 29 100.0 0 ............................. | A [92110] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111579-110393 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTO01000003.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4343 NODE_3_length_194559_cov_2.14503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111578 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 111517 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 111456 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 111395 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 111334 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 111273 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 111212 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 111151 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 111090 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 111029 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 110968 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 110907 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 110846 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 110785 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 110724 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 110663 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 110602 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 110541 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 110480 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 110420 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //