Array 1 323750-325367 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMD01000015.1 Actinoplanes brasiliensis strain NBRC 13938 sequence015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 323750 29 96.6 32 ............................C CATAATTCGCGCCTCAGGTACACATTTAAGGG 323811 29 100.0 32 ............................. GCCGAGCAGCGCGTCCGGGTCGCCAGGCTGGC 323872 29 96.6 32 ............................C GGCATCGTGTGGTACTACCGGGACAACGCAGC 323933 29 96.6 32 ............................C CATCGGGTGATCGCCCCGGTTGAGGCGATGGG 323994 29 100.0 32 ............................. ACATCGGACCCGTCTGATGAGCTCCTGGGAAA 324055 29 96.6 32 ............................C TCGGGGCTGGAGACAGGTTGGTTCACGGTGCG 324116 29 100.0 32 ............................. TGCTGCTCGACAGCAGCGTCGGGTCGATCGCC 324177 29 100.0 32 ............................. GAGTACCCCGACCTGCCGTGGATGGAGCCGCG 324238 29 96.6 32 ............................C GAGCGCGGCCAGCAGCCCCCGCGACTTGTTCA 324299 29 100.0 32 ............................. TAGTGCGTCAGGAACTCGTCCAGGGGAATGGA 324360 29 100.0 32 ............................. CCTTCATCTACCTACCCCCGACCAGCCCCATC 324421 29 100.0 31 ............................. TCGCCGCCCAGCGGACAACTCCGTCGGACTC 324481 29 96.6 33 ............................C TCGGCAACCGCGACGACGAGATGGCCCGCCACC 324543 29 100.0 32 ............................. ACTGGGGCCTCTACCTGGGCGGCTGGGGCCTC 324604 29 100.0 32 ............................. TACGGGCCGTTGCCGGGGTGGGCATGGATGGC 324665 29 100.0 32 ............................. TGACCACCGCCCCCGCGACCCCCAGCCGGTTC 324726 29 96.6 32 ............................C GGCGGCGGCATCACGGCCGCGCAGTCGACGAC 324787 29 96.6 32 ............................C TGCGGCTGCTCGATGACCCGATGTACGCGATG 324848 29 96.6 32 ............................T GACCATGGCCATGCAGGATTACGAGCTGGACG 324909 29 96.6 32 ............................C GTGACCTGCGCGAGCCTGCTCACCCTCACCGA 324970 29 96.6 32 ............................C GTGCCGGCCATGAACGGCTCGCCGGACTCGGC 325031 29 100.0 32 ............................. TCTCGATCGCGCCTACGGTCCCGTACATCTGC 325092 29 96.6 32 ............................C GGGAACAACTACATGCAGGGCGCCCACCTGTG 325153 29 96.6 32 ............................C GTGCCGGACCGCGGGTACAACGACGTGCCGCA 325214 29 100.0 32 ............................. GAAAAGGACCTTAAGGTTGCCCTTGCGATCAA 325275 29 100.0 32 ............................. GCGTCGAGGGCGCCGGCGACGACGGTTTGGAT 325336 29 93.1 0 .........................A..C | CTT [325358] ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 CTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : AGCCCCGAGACACCGTCGTTGACCAGACCCGAGGACAGCCCCGACAGGATCACCACCAGAACCGCGACAAGGGCGACGACGCTCCCTATGAGCGTGAACCGTCGGCGCGCGAAGCGAAGCTCGCGCAATGCCAGGAACGTCGATCCTCCTCCCGGGTTATGACTCGATTGGCTGACCGCGACGGCCACTGCAATGCTGTTGTCGTAGCGCAGTCGGCGGCGGCATCGCGGCGAGCGATCACCCATGCCCCGCACCCCGACCGTCACTTGCCATCCGGCGAGGTGGCATTCGACCTCTTCGGAAGCACTCCGACGCTGAGCTCGCGTCTCACCGACTTCGGTGCAGTCAGTCGGCAAATTCATGCGCCGGCGCAAAGCAAGGGCGGACAAAAGCGCCCACGCAAAAGTCTGGTGGGCGCAGGCGCCCACCAGACTAGAATCGACGCGACACAAGTGAACAAAAACCAGGTTCTTGATCTCTAACCCCGCAGTTCAAGAAGC # Right flank : CGAACCGCGTACGCCGGGGATTTCGTCCGCGCGGGCCGCTCATACCGGTCCGTTTTGTTTCGCTCGGGTGAGGGCGCAAGCTAGCCCTTGCTTTCCTGCCTGGAGGGCGGCGGACGTGACCGTTCCGGCACAGGCAGTCGTTGCGACACATGAGCAGGTTGAATGCCGGCGGTGATGGACCTGGCCGAACCCGACCACCATCCCGGCGCTTTCGTGCGTCCCCGCCGAACAACACGACGCCTGGCAAGTACGGCTATATGCCGCGGAGGTCGAGTTCGCCGCACGGGAGTACGGTCTTGAGCTGCAGGGCCGCGTGGGCGGCGGGAGGCGCGTACGACGTTCACCGTGGGTCTCAGGGCACGACGATGACCGTCCGTCCCGCGGCGTGGCCGGCGGCGTTGTGTTCCTGCGCGGCGGACGCGGCGGCCAGCGGGAACGTGTGCTGGACAGGGATTCGCAGGATGCCCTTGGTGTACAGGGCAGCGGCCTCGCGGAGCGCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43725-44789 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMD01000031.1 Actinoplanes brasiliensis strain NBRC 13938 sequence031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 43725 28 100.0 33 ............................ CTGCTCGAACGACCCGCTGTAGCCCTTGCGGAG 43786 28 100.0 33 ............................ GTTTTGCTCCATCTGCACAACCCCCCGCGGGTC 43847 28 100.0 33 ............................ GCAGTCGCAGTGGGACATGGTCGACGCGATGGC 43908 28 100.0 33 ............................ CGCTGAGGATGTGCACGGTCGGGGCCGCGCCGC 43969 28 100.0 33 ............................ CGCCGCCGTCTGCGCCAGGGTGTCCGCGTTCGC 44030 28 100.0 33 ............................ CACGCCGGTGCGGTTGCTGGCGCGGGTCCCGAG 44091 28 100.0 33 ............................ CTGCTTGACGTGCTGCGGGTCGACGTCCACGTA 44152 28 100.0 33 ............................ GGAGGCCACCGTGCCGCTCACCGCCAGCATCAA 44213 28 100.0 33 ............................ CTGGGCGGCGGGGGCGCGCTGCGCCTCGGTCAT 44274 28 100.0 33 ............................ GGTCAGCCATGAGCAAACCGGCCACACCCGGCC 44335 28 100.0 33 ............................ GACGGCGAGACGCCGAAGGGCGCCGTCGCGGGA 44396 28 100.0 33 ............................ CAGTCCGCCAGCAACCGGCGGAAGAAGGGTAAC 44457 28 100.0 33 ............................ TCGGGCACGGCGGCCGCCTTCCGTCGGGGTGCA 44518 28 100.0 34 ............................ CTCGATCACAGGCGGAGGGCTGAGGTCATGAGCG 44580 28 100.0 33 ............................ CTGGGCGAACACCAACGCTGCTGCGACCCGCTC 44641 28 100.0 33 ............................ TGACAACTGGCACTTCATGCCCCGGAGCGTCTT 44702 27 96.4 33 .....-...................... CGGGTGGGCCGTGTTCTCTTGCACCTGCCAGGT 44762 28 92.9 0 ...C.......A................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.4 33 CTGTTCCCCGCGCACGCGGGGGTGCTCC # Left flank : TCCGGCTCTGGGACGACGAAGGCCTTGAGGTCGCCGCCGGTCGCAACTACGCCGACACCGGTGACGTGGACTTCTGATGATCGTCATCGTCCTCACGTCTTGCCCGCCTGGCCTTCGTGGCCACCTGACACAGTGGCTGCTCGAAATCTCCGCCGGCGTGTACGTCGGACACGTCAACACCCGCATTCGTGACCGCCTATGGGCCCGGGTAGTCGACATGGCCGGCCCTGGCCGGGCGCTTCTCGTGTATCAGAAGCACAGTGAGCAAAGGCTCTCTTTCGCCGTGCACGACCACCATTGGGAGCCAGTCGACTTGGACGGCGTGATGCTGATCCGTCGGCCTGGGGAATCGCCTTTCAACCCGGCCTTGCCTTCCGGCTGGAGCAAAGCGGCCAAACGTCGCAGATTCGGACGCCGCGGCACCGAGACAAGAACCCACTCCAGCAACCCGACTGAACAAAAACCAGACAGTTGATCTTCAGGATCCCAGTTCATCAAGC # Right flank : CGCCGGAAGTCAGTGTCGACGGCGGCTGAAAACTGGTTCTGGTTCTGGCCCTCATCTCGTGATCGCAACTGACCCCAGGCCGTCTGATCAGCGGCTGAGCAGAACGCGCTTCCGGAGCAGAGCGAACCCGGCTCGCCCATACATCTGCCTTTTGAGCATCTTGATCCGATTCACGTTGCCCTCGACCGCGCCGGAGCGATGCGCCGCACCGCTGCCTGATGAGCTAGATCCACTGTGTACAGTTCCGACGGTGCGTCGATTCTGATCTTGGAATGGTCTTCCCTCACCTGGCACGCCTGGCGATCGACCGGGTCCAAGCTCAACCCACATCCGTGCTGCTCGAAGCCCACATTCGCACCACCGACGCAGACTGCCCGGCCTGCGGTAAGCCCAGCGCCCGGATTCACAGCCGGTACACCCGCCGAGTCGCCGATGCGGTGGTCGGCGCCCGCCGGATGGTCCTGAAACTGCTGGTCCGCCGCTTCTTCTGCCTCGCCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //