Array 1 2634392-2635701 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778143.1 Escherichia coli isolate SC422 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2634392 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 2634453 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 2634514 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 2634575 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 2634636 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 2634697 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 2634758 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 2634819 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 2634880 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 2634941 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 2635002 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 2635063 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 2635124 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 2635185 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 2635246 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 2635307 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 2635368 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 2635429 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 2635490 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 2635551 29 100.0 31 ............................. ATTACGCGCCAGCAATGCTGACAGCGGCAAA T [2635579] 2635612 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 2635673 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2651203-2651964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778143.1 Escherichia coli isolate SC422 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2651203 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 2651264 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 2651325 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 2651386 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 2651447 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 2651508 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 2651569 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 2651630 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 2651691 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 2651753 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 2651814 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 2651875 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 2651936 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //