Array 1 17574-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFME01000038.1 Neisseria meningitidis strain NM1264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17573 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17507 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17441 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17375 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17309 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17243 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17177 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17111 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17045 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16979 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16914 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16848 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 16782 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 18773-18341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFME01000038.1 Neisseria meningitidis strain NM1264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18772 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 18706 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 18640 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 18574 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 18508 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18442 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 18376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTTTCTCATTTCGCAGTGCTACAATAACGGCAACCCACTAAATTTTGCAAATGC # Right flank : NGTTGCGGTAGCGGCATAAGGTGCTGTAATCGGGGATGCTCAGTTCGTCAAAACGGCAAAACAGGTTGAAATCGATGCGGGTGATGAGGCTGTGTTCGAGTTCGGGATCGGAGAGGCTGTGCCATTGTCCGAGCAGGACGGCTTTGAACATGGACAACAGCGGGTAGGCGGGACGGCCGCGGTGGTCTCGAAGGTAACGGGTTCTTTGACGGTTCAGGTATTGTTCGATCGGTTGCCAATCAATCACCTGGTCCAACTTCAATAGCGGGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //