Array 1 34352-31679 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFE01000193.1 Acinetobacter baumannii strain ABBL059 contig-49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 34351 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 34291 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 34231 30 100.0 30 .............................. CAACACCAATACCTCTGTTAAAATTTTCTT 34171 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 34111 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 34051 30 93.3 30 ............................TG TCACAGATTCATAGTGCTTTATAGCTAAAG 33991 30 93.3 30 ............................TT AAATTGTTTTGCATGAAGGTAGCTCGCATG 33931 30 93.3 30 ............................GT GAATATCTCCAACTGCATACAGCTTGCCTT 33871 30 100.0 30 .............................. AACCATCCACAGGGTAACCATTAGCAATAC 33811 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 33751 30 93.3 30 ............................TT CTGTTAGCTCTGCTGGATCATCAACGCCAT 33691 30 96.7 30 ............................G. ACTGAAACAGTAACCCTCAAATGTTTAAAT 33631 30 96.7 30 .............................T TTTCAGCGAATGGTGTTGTAATTAGTGTTG 33571 30 93.3 30 ............................TT TTGCAATCATGATCCGGACGATAAAAAAAT 33511 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 33451 30 96.7 30 .............................T GACGAACCTGTCTTACCTTCAGATCCTTCT 33391 30 96.7 30 .............................T ACACTCATCGCGATTCTATTAAAGTCTGTT 33331 30 93.3 30 ............................TT CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 33271 30 100.0 30 .............................. AATGAGAAATTCATAACCATATACCCCGAG 33211 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 33151 30 96.7 30 ............................T. TGAGAAAGAAAAAAATTGCGACAAAGATAA 33091 30 96.7 30 ............................T. CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 33031 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 32971 30 96.7 30 ............................T. AAGATACGTTTTTAGCTTTTAATGTGATTT 32911 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 32851 30 96.7 30 .............................T TAGCTAAACCTTCAATCTCGCCTTCAGCTA 32791 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 32730 30 96.7 30 .............................T GTCCATTTTGCGGATACGCAGATGGGTTAG 32670 30 93.3 30 ............................TT CCCCCTTGAGCGCTTCAACCATCGCCTTAA 32610 30 100.0 31 .............................. ACTTAGATGACAAAGTATTAAAGCTCTGTGA 32549 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 32489 30 100.0 30 .............................. TGGATGGATATGGCATAGGCAAAGACGGCA 32429 30 96.7 30 .............................T AGAGAATCGGTACTGGATAACCTTGAGCGG 32369 30 96.7 30 .............................T CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 32309 30 100.0 30 .............................. ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 32249 30 93.3 30 ............................TT GAGAATTATGAAAAAGCAGGCTTCTATGAA 32189 30 100.0 30 .............................. CAGACATACTTCTTTCATTTGCATCGCCAG 32129 30 96.7 30 ............................G. GGCGTAAAGATGCGGTGTTGATCTTGCACG 32069 30 96.7 30 ............................T. CGTAATAAGTACACGGTGCAATCGGTGCGT 32009 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 31949 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 31888 30 100.0 30 .............................. CGTGAACAATTGTTTTAGCTTTGAACATTA 31828 30 86.7 30 .............C...T..........GT TACTGGGTTGCGGAATATATTCGCAATTAT 31768 30 83.3 30 A.....AA.........T...........T TTTGATCTTTACTTATTCTCGCTTCAAACA 31708 30 66.7 0 .......A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 45 30 94.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : | # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3398-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFE01000200.1 Acinetobacter baumannii strain ABBL059 contig-51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3397 30 93.3 30 ............................AG CGTTACCTTGCGTTAAAAAATTCAATTCCA 3337 30 96.7 30 .............................C TGCATCCCTTAAAACGGTTTCAATCGGCTC 3277 30 100.0 30 .............................. AATAGGAGGCAGATACTCATCAACCTCTGC 3217 30 93.3 30 ............................AA GAGTTTTCTCTTTTGAGTGATACCAAGCCC 3157 30 93.3 30 ............................AA CAACATACAATACGTTGCCCAATGTGCCCC 3097 30 100.0 30 .............................. TATCGGCAAGTGTCTTTTAAAGGGCCTTAA 3037 30 93.3 30 ............................AA AAGTTTGGAATGAACTCACCCAAGAAATCG 2977 30 96.7 30 ............................C. AAAACTGGACTGATTGTTTCACGTGCTGCT 2917 30 93.3 30 ............................GC AGTAAAACCCATCGATGATTTACCTAAACC 2857 30 93.3 30 ............................CA TGCGACGAATTTGCCTCCGTTTACGGTGAT 2797 30 93.3 30 ............................AG AATGTTTACCTGTGATTTTCGCGGTTAACA 2737 30 93.3 30 ............................AG TACGGTGAGCACCACGGTCAAAGTCAAAAG 2677 30 100.0 30 .............................. GGTGGTGATAAGGGGTGCCGAGCCAAGTCA 2617 30 93.3 30 ............................AC TCCCACACCTTTTACTCGACCTTGGTGGTG 2557 30 96.7 30 .............................C TAGAGCTAGCTCCAATTCCAATGTTTTCGG 2497 30 96.7 30 .............................C ATACAACAGTGCAAAAGTCTGGTGGTAAGG 2437 30 93.3 30 ............................CA TAGCAACACCCTTAATTAACTTAGGTGGAA 2377 30 100.0 30 .............................. GGTATAACTAGGATTGCCTTTCTTGGTGTA 2317 30 93.3 30 ............................CA CTGGATGAGCTATAACCCCTACTACGAAGA 2257 30 100.0 30 .............................. TACAAGGTAAATTCTGTGTTTTTAGAGCAA 2197 30 93.3 30 ............................AA TTAAAAATCTATTGTAAAGTCTTTTGTTCC 2137 30 93.3 30 ............................AG TTAAAAGCTGAGCAATACCAGTACCGCCTG 2077 30 93.3 30 ............................AC GGGCATTTTGTATCACGTATTGCTGTGTTA 2017 30 96.7 30 ............................G. GAAGATTATGCAAGACGTGTCTACGGTCGA 1957 30 93.3 30 ............................CC TTTCTTGTGCGGCCTGTGATTCGCTCTATT 1897 30 100.0 30 .............................. CAACAGACTGAGCAAAAGCTTCACTAGGAA 1837 30 93.3 30 ............................AA CCGCGTTTGTGATTAGCGCATCATTACCAG 1777 30 96.7 30 ............................G. GTTAATGTGAAAGCCCCAACTCATTTAGTA 1717 30 96.7 30 ............................A. AAAAAGTACCGCCATCATCATTGCTTACAC 1657 30 93.3 30 ............................AC GAACTGTGCTTGCTTCTGTTAAGCGTTCAG 1597 30 96.7 30 .............................G ACACACTAAGCAAGTTGGGAGCATTGAATT 1537 30 96.7 30 ............................G. CTATACACATCTGTTCATGATTACCACGAA 1477 30 93.3 30 ............................GG GCTAAACTTCCTTTGGTACCATCTTGAAGA 1417 30 93.3 30 ............................AA TCGAAATGACAGCGATGGACCGCAATATTT 1357 30 93.3 30 ............................GC AGATAAGTGGTTGCGTAATGATGTGGCTAA 1297 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 1237 30 93.3 30 ............................AA CTAATCGGCAATCCTCTGTCAGCTTGATAA 1177 30 96.7 30 .............................A AATACAATGGAACAGAGACTGTTAAGAATG 1117 30 96.7 30 ............................A. TCATTGGTGGTGAGGATGAGGACCAATGGA 1057 30 93.3 31 ............................CA TTTTTACGCATAACAATATTACCTTTACGCT 996 30 96.7 31 .............................A TTTAAACCATTGCGTTAAAAACAATTCATAT 935 30 96.7 30 .............................G CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 875 30 93.3 30 ............................AC TAATTCAACAGGTACGGCATACGTTAATCC 815 30 96.7 30 .............................G ATGATGTTTGTTGGATTGCAACTGATGAAG 755 30 96.7 30 .............................A GTGAAGAAGTATCAAACATTGTTCAAGTAA 695 30 96.7 31 .............................G TTAGAGCCACACAGCAAGCTACGCAGAATGT 634 30 100.0 30 .............................. CTTCATCTTTAAATTTTCGCATTGCTGTGC 574 30 100.0 30 .............................. TTAGATCGTATTCGTCGTGAAAAATTACCA 514 30 96.7 30 .............................G TCCCTGCTGCAATCATTTCAAGAATCTTTT 454 30 96.7 30 .............................C TGAGATGTACGCTAAACAATTCACGAATGC 394 30 96.7 30 .............................G AATTTTACAAACTAAAGCTGGACGGAAAAT 334 30 96.7 30 ............................A. CGATCTTAGCACCAAAATCGTAATATGTAG 274 30 100.0 30 .............................. GAGCTCTCTCACAACTAAGCGAATTTAAAT 214 30 100.0 30 .............................. CTGGAAAGCCTATTATGGATAGGATTATCG 154 30 100.0 30 .............................. GAGCTCTCTCACAACTAAGCGAATTTAAAT 94 30 100.0 30 .............................. CTGGAAAGCCTATTATGGATAGGATTATCG 34 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 57 30 96.1 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TGAGC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9537-11724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFE01000024.1 Acinetobacter baumannii strain ABBL059 contig-1000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 9537 29 100.0 31 ............................. AGAACTGGATTTGTATGTATGTGTACGTCCT 9597 29 100.0 31 ............................. TATGCTCACATGGTGATGACATCTTCAGGTG 9657 29 100.0 31 ............................. ATCCCCCCGATAAAGCTGTGGGGTTTGGTTG 9717 29 100.0 31 ............................. CCAGAAGACGTGGACTCCCCGCCTCGGCTGA 9777 29 100.0 31 ............................. ACAATATGAAATCATTCACTCTGACTACAAA 9837 29 100.0 31 ............................. TTAAGAATCTTAAACATCAATATGGCAAGTA 9897 29 100.0 31 ............................. ACTTCTTGCAATCAGATTGACTTACACCATG 9957 29 100.0 31 ............................. TTTACAGACCGTAAAAGCCCATTCACAAAAT 10017 29 100.0 31 ............................. TTCAAGTATCAAATTTAAGTTACCAAAACAG 10077 29 96.6 31 ............................T TTCTCAATTCGCGCAGGGTCCTGAGTAATTA 10137 29 96.6 31 ............................T GTAACGGTTGCAGCTCCTTTCAAAGTTGAAT 10197 29 96.6 31 ............................T GGAATATTTTGTTGCTGAGTTGAATAAACTT 10257 29 96.6 31 ............................T AGATCGTGACGACGTTGTGGCAGTTGCTGGC 10317 29 100.0 31 ............................. GTATTAGCACAGCAACCAACAATATGAAATC 10377 29 96.6 31 ............................T CTAACCGTGATACTTTCTCTTTAATTAAAGA 10437 29 96.6 31 ............................G GAACTGGATAGAGGGTAAATCAGCACCAACT 10497 29 100.0 31 ............................. ATATTCTCAAGATCAGATGATTAAGGACCTT 10557 29 100.0 31 ............................. ATTGTTGTAGCTTCGGCGTAGCTTAATGGTG 10617 29 100.0 31 ............................. TCCCAAACAAACAATCCAGCATTTTCACCTT 10677 29 100.0 31 ............................. CGGTAAATAAATACTTGGTTAATGTCTTCAT 10737 29 96.6 31 ............................T GCCTCCCCGATAAACTGCGTTAAACTATTAC 10797 29 100.0 31 ............................. TTAATAATCAGCCTGTCACCGGCAACTGCGA 10857 29 96.6 31 ............................T CGAGCTGATTCTGGTTGGCTTGTACGTGTAC 10917 29 100.0 31 ............................. AGATGCCGTACAGCTTAATTGTTTTTAACAT 10977 29 100.0 31 ............................. TTACCGCCTGCACCAACTACACGTGGAACAA 11037 29 100.0 31 ............................. CAGAAAGCTGAAGTAAATCAAAAGCAGTAAA 11097 29 96.6 31 ............................G ATCAACGATTGGGATATTCGAAAAGTAGAAA 11157 29 100.0 31 ............................. ATCTGATCCATAAACGTTGTGCCCTTGAAGA 11217 29 96.6 31 ............................C ACAGGAATGGTTGCAAATCGGCTATGTTACA 11277 29 96.6 31 ............................T TTACTTAGCAGCCCAAATTTATTCTAACAAC 11337 29 100.0 31 ............................. TAATTACTTTAAGCAACAACCACAAGGCTTT 11397 29 96.6 31 ............................T ATGCAAATTTTAAATAGTTAAATTGCGAAAC 11457 29 96.6 31 ............................T ATTAAATCAGGCTGTCAAAATGGCGCGACTT 11517 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 11577 29 100.0 31 ............................. GTCATCTGGTAAAGAAATTACGTATTCGAAC 11637 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 11697 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 37 29 98.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : | # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 982-3771 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFE01000095.1 Acinetobacter baumannii strain ABBL059 contig-2000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 982 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 1042 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 1102 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 1162 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 1222 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 1282 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 1342 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 1402 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 1462 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 1522 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 1582 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 1642 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 1702 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 1762 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 1822 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 1882 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 1942 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 2002 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 2062 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 2122 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 2182 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 2242 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 2302 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 2362 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 2422 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 2482 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 2542 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 2602 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 2662 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 2722 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 2782 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 2842 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 2902 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 2962 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 3022 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 3082 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 3142 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 3202 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 3262 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 3322 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 3382 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 3442 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 3502 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 3562 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 3622 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 3683 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 3743 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 47 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GTGATTCACAGGTGCTCGGTGATTTACTTGGTCAAATACCACTTGATGAGCGAGTAGATTCTGTCTATACCGATGGAGCCTATGACACTAAATGCTGCAGACGAGTGATCTCAGATCGTCAAGCATATGCGGTGATTCCGCCAAGAAAAAATGCGAAACCGTGGAAAGATACAAAAGTTCATTCGCAAGAGAGAAATGAATTACTAAAAACAGTTAAGCGTCTAGGAAGAGCCCTTTGGAAAAAGTGGTCTGGTTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCTACTCAAGGAATTTTGACAGCCAAGTGAATGAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCAT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //