Array 1 6063-5695 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJZS01000011.1 Porphyromonas gingivalis W50 ctg120009322986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 6062 36 100.0 30 .................................... TCCCATTTTTGAGCCAAATCTGATACAAAT 5996 36 100.0 32 .................................... TACAACATCTTTAGTAATTTCTTTGTGATTGC 5928 36 100.0 30 .................................... GTTGTCCCAAGCCTGAACGGTAGCGTTGTC 5862 36 100.0 30 .................................... AAACGCATCGTTATAAGTTTTTGTGATTGC 5796 36 100.0 30 .................................... ACCTTTTCTTCCACATCCTCAGGAGCAGGA 5730 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 6 36 100.0 31 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAGGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATTGCTAAAGTGATGGAAGATGGATAGGAGGATCGTGTTCGGAGGAGAGGGCTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCATACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGTCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 110120-109622 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJZS01000051.1 Porphyromonas gingivalis W50 ctg120009322988, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110119 36 100.0 30 .................................... AAGACGTGTCGGCGGACGAGCTAATCGACT 110053 36 100.0 30 .................................... AAGACGGAGTACAGGGACGTTGTCCGCATC 109987 36 100.0 30 .................................... GGTAGCACATTCCTTGAACAAACCTTTATA 109921 36 100.0 30 .................................... TGGAGGTAAGGTCAAGAACCCGACCCTTGA 109855 36 100.0 30 .................................... AGAATTTGGTTATATAAGATATAGTCTTAT 109789 36 100.0 30 .................................... AGATCGAAACGGGTATGCCTTACGTCTATG 109723 36 100.0 30 .................................... TGGAGGCAAGATGTTTTACTTCGACAAGAA 109657 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCA # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGGCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 17147-15603 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJZS01000080.1 Porphyromonas gingivalis W50 ctg120009322991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17146 30 100.0 36 .............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAGC 17080 30 100.0 35 .............................. GATCCGATTCGTCTGCGTCGTCGAGCATAAAGGCG 17015 30 100.0 35 .............................. AAAAACGACAGCGTGAAGTCGCCGGAGAGGCTGAT 16950 30 100.0 35 .............................. AATAAAGCAGATTGGGAAAATCCTATATGTACTTT 16885 30 100.0 37 .............................. TAGGTTAGTAAAATAGAGGTGTTCGCCGTAATATACT 16818 30 100.0 37 .............................. CTGCAAACTCGTACCTATCCACTGCAGGCTTGGCTTC 16751 30 100.0 37 .............................. AGCTATAACCCTCGATGAGTACTACGAGGGAAATGGC 16684 30 100.0 36 .............................. GAAGTAGTTCTCGCTCGCTACCGAGAACGCTTCTTC 16618 30 100.0 34 .............................. TTTTCAGTCGGTAGCGAAAACTACTTTTTATTTC 16554 30 100.0 35 .............................. AACGCATTTTATGTGCGCCAAGATAATTGGGGCAT 16489 30 100.0 37 .............................. TTACGGCAAAAGGGTTTAGATACCTAATGGAAAAATC 16422 30 100.0 35 .............................. CATTTTTACAATGGATGCCGAAACCGACAGTCTAA 16357 30 100.0 36 .............................. AAGAAAGAAGAAAGAATAAGTAGAAATAAAGATGAT 16291 30 100.0 37 .............................. TAATGTTACACAATGGTATACTGATGATGGTAAACTT 16224 30 100.0 37 .............................. TTACGAATATCTAACGATGATACTATAGTGCAGTTTT 16157 30 100.0 37 .............................. TAAATCAATCAGACAGTATCAAATGAAGTGCGGATAC 16090 30 100.0 35 .............................. CTATAAAAGAAATTCCAAGAGAGCATGATTCTGAG 16025 30 100.0 35 .............................. TTAGCAGACGAAGACGATTTTTTCAATGTAGTAAA 15960 30 100.0 36 .............................. ACAAGATGGTAAAATGTTTGCTAATCTTAAAACTTT 15894 30 100.0 36 .............................. GATTCTCTATATGTTCAGTTCAATACAATGCTGAAA 15828 30 100.0 36 .............................. AGCGTATTTCGGTCTATCTCGTAGCGTTCGAAAAGC 15762 30 100.0 35 .............................. ATGATAGAGGAGATAGGACTCGCGCTCACCGATAC 15697 30 100.0 35 .............................. CTCCCGGGTTGGGCAGCACGGCTTTGAGGAATTGG 15632 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : | # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 32513-33420 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJZS01000084.1 Porphyromonas gingivalis W50 ctg120009322929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 32513 37 100.0 36 ..................................... TCACTGACCATGAGGTAAAGTACCCATTCTATCGGA 32586 37 100.0 37 ..................................... TGTTTCGCCATGACTTAATAAGTTTTACAATTTTTGA 32660 37 100.0 36 ..................................... ATTACTGATAGCACTGCAATAGCAGCGAATACCAAG 32733 37 100.0 37 ..................................... TGTCGATTTCCTTACCAAAAGCCAGTTTTACTGTTGG 32807 37 73.0 26 ..................CTAT....A..T.G.CAG. CCTTCTTAATTCCCCTCTCTATAAAC AG [32824] Deletion [32870] 32872 37 100.0 41 ..................................... CTATCATCGTTGCTATCATCTGATAAAGCCCTACCCAAAAA 32950 37 100.0 36 ..................................... TCTAAGCATTATAGCTATACCATCATTAATACTTGT 33023 37 100.0 38 ..................................... TTGTGAGTATAGGGCTTTTCTACTCCTTCTTCCTCAAT 33098 37 100.0 34 ..................................... GACAGCGGGGTTTTTGCTGAACCAACTCCCTGCA 33169 37 100.0 36 ..................................... TTTGATAAGTTTGGTATCCAATTGGAGAGTCTAATT 33242 37 100.0 34 ..................................... AGATTAAGAACATTTTATAAGTTCAATTAATTTT 33313 37 97.3 34 ....................T................ ACAAATGCTTGTTTTTCTGCTTTAGTAATACGTT 33384 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 97.7 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAAGAAATCTCATTGTATATCAATGAGATATAATCAACTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : CATTGATTACCGAGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACTTCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCCACGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGAGGGGACA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //