Array 1 214055-216976 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXY01000001.1 Neisseria elongata strain C2014003241 C2014003241_S41_ctg_1515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 214055 33 93.9 32 CT............................... AAGCACGAACGCAAGCGGCAGTTTCAGACGGC 214120 33 93.9 32 CT............................... ACGGCAAATCAAAGCCTTAAGCTGATTACGGG 214185 33 100.0 32 ................................. TTGTGTTCTGGTGTTAAATGTTGTAGTCTGCG 214250 33 93.9 33 CT............................... GCGTGAAATAAGGGTGCGCAAGCGTCCACACGG 214316 33 93.9 33 CG............................... TGCATAAATACCCCTTATAAAGCAGTCATTACA 214382 33 97.0 32 A................................ AAAATAGTATTGATTTTGAAAAAACCGCGAAC 214447 33 93.9 31 AA............................... TAGTGGTGGTTCAAATATTGGCCCTGTTGGT 214511 33 97.0 32 .G............................... GTTATTATGGCCGCATCCGTTACCGGAATTAT 214576 33 97.0 33 .A............................... ATATTGGTGGGCAAAATAATACTTTATTAGTTG 214642 33 93.9 32 AA............................... ACAACGAAATTACTCCCGATACAGCTTTTGAA 214707 33 100.0 33 ................................. AAGCGTGGCGTTGGCAAAAGCTGATTTCTTGAG 214773 33 97.0 33 C................................ TATTTTCATCAGGGGTGCGATAAACCTAAACCT 214839 33 97.0 33 .A............................... AACAAAAAACTAATCATGATGAACCGCCAGCCC 214905 33 93.9 33 CT............................... TATCGTACCTATAATATTGATGGACTTTGATTA 214971 33 93.9 33 AA............................... GGCGCAAAAGCCTCCGCCCTATATTCAAACTTT 215037 33 93.9 32 AA............................... CTGCGATTGCGCGCATCGGCGGCAAGTACACG 215102 33 100.0 33 ................................. CAAGCGTTGGGCGAAACGCTGCACCATCGCCCG 215168 33 93.9 32 CT............................... ACGAGCAGAATACCGAACAACACGGCCAGACC 215233 33 100.0 34 ................................. TTGCGGGATTATGCCGCCGGTCGGCAGTTGAAGG 215300 33 93.9 32 TG............................... TGTTAATTTTGATCGCTTTAAGGGTTTTTCAT 215365 33 93.9 33 TT............................... TAAGCTGCCTAAAGACCCGCCGTCCGGTAATAA 215431 33 100.0 32 ................................. CGCCGTCATCTCCGATAACCGCTCTATAACGT 215496 33 93.9 32 AG............................... CGGCCAGGGTGTCCAAACTTTCGGCCTTGCCC 215561 33 93.9 35 TG............................... TACAAGGAAGGGAAGGTTGTGCGGTTTTACGGCAT 215629 33 93.9 33 TG............................... TACACGACTAAACGCGTCGGCGGCGGCGTGGAC 215695 33 93.9 33 AA............................... GCCTTGTGGTTGGCGTCGGACAAGATGGACGAT 215761 33 93.9 33 AT............................... AGCAGATTTTGAGTGTTACGCCCCTCAAACCTG 215827 33 93.9 32 CT............................... CCCGTCGATAGAGGGCGGCAGCCTGAATATCG 215892 33 100.0 32 ................................. GAGGTACGTACTGTGAACCCCGACCACGCCCG 215957 33 97.0 32 C................................ TTCCGCATGATGTTTTGATTGAGCCGGGAAAA 216022 33 93.9 31 TA............................... TAGACATATCTAATACCTCTCTGATTTTTTA 216086 33 97.0 31 A................................ GGCGGTGCTTACCCAATTTGCGAAGAGCTTG 216150 33 93.9 32 TG............................... AGGAGGTTCAGCAGGTTCAGGCTGTGCCTGTT 216215 33 100.0 31 ................................. CACCTGATTGACCATTACCCGAACCGTTACC 216279 33 97.0 33 A................................ TCTTGTAATAAGCATTTCTTGGGCGTCTTTTCC 216345 33 93.9 34 AA............................... GCTGCTAGGCTTCCAAACTGGTGGATACACTGGT 216412 33 93.9 33 A.....T.......................... CGTCGGTACGGCCATCTTCGGCGTGATTGGTAT 216478 33 97.0 33 T................................ CGTCCTGCGGAATAGGCAATCAGTTTTCTCATG 216544 33 100.0 33 ................................. TACAAGCTTGTTTATACGAAAGCCCATTTGAAT 216610 33 93.9 33 C...............T................ ATGTTTGTCCCCAGCTGGAAACGGATGGCTGTA 216676 33 97.0 33 A................................ AGCCTCTACGGGAGCAGACGGCTGAACTGTTTG 216742 33 97.0 34 A................................ GCCCTACTGAAAGTGTTCCAAGCCGACACCTTCA 216809 33 97.0 35 A................................ CACTACGTCACCGGGGATGACGCCCAAGATGCAGG 216877 33 90.9 34 C............A........T.......... CAAGTGGACAAAGAAGGCAATATCAGCACCGCCC 216944 33 87.9 0 .........T............TAC........ | ========== ====== ====== ====== ================================= =================================== ================== 45 33 95.6 33 GCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCTCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGGAACCGACAGCCTGCGCTTTTACCATTTAGGTAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTATGAATGCGAGTGTAACGAAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : CGGTTGCCACCTCCTGTTTTGAAGAGGTATCTTGATCTACGGCGTTCAAACAGCCATAGCCAGTAAAATATCCACGCCGAAATGATCTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGACCATATGGAAATGCCTTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCAGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAGGTATTGCAACTGATTGAAAATACATTGAAAGA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60449-58763 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXY01000009.1 Neisseria elongata strain C2014003241 C2014003241_S41_ctg_1531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 60448 36 100.0 30 .................................... CAACACTTTCGGCAATCGCGAACTGGCGCG 60382 36 100.0 30 .................................... CCCGAGTGTGTTCACGCGGCAGGAAGCGGC 60316 36 100.0 30 .................................... CAAGTATAGAGAGCGGCTCCGCCGCCATAG 60250 36 100.0 30 .................................... AATTCCCAATAGACTTCGCAATACACTTCA 60184 36 100.0 30 .................................... GGAAAAGGAAAGACAAGATGCAAAGATTGC 60118 36 100.0 30 .................................... AAAAGACGTTTTTTATCGAATGGATAGGCC 60052 36 100.0 30 .................................... TTATTATGATGCCTGCGCCGCCGCCATCAA 59986 36 100.0 30 .................................... CTACCGCAAATCCACCGCCGCACTCGAAAT 59920 36 100.0 30 .................................... CATCACTTCGGCCAATTCGGCGGAGCAGTT 59854 36 100.0 30 .................................... TAAAACCGTTCGGGGTCGTCCTTCTTACTG 59788 36 100.0 30 .................................... TGCGGTAGGGGACGATGTAGGCAAAGCCCA 59722 36 100.0 30 .................................... CTCCCACGGTTTATCACGGCTGATAGAATT 59656 36 100.0 30 .................................... CTAGTCATTTTAAACTCTCAAATAACATGT 59590 36 100.0 30 .................................... TGACGGTTTGGCCTTGATATTCCCATGTCT 59524 36 100.0 30 .................................... CCTTTGTGGTGGTGTGGTGTGATTGTGTGA 59458 36 100.0 30 .................................... GGCTTTGCTGTGTTTGGTGTTGGCGTTTGA 59392 36 100.0 30 .................................... AAATTCAATTCGCCATGTATATTGTCATTG 59326 36 100.0 30 .................................... TGATATTTCTTGGTTACGCACCGTCAAAGG 59260 36 100.0 30 .................................... TGATATTTCTTGGTTACGCACCGTCAAAGG 59194 36 100.0 30 .................................... TAGACATGGCAGACATTGCGTTTTTAATAT 59128 36 100.0 30 .................................... TGTTTGGGCAGCTTCGAGGACATCGCCCGA 59062 36 100.0 30 .................................... TGATGCCGATGGCAACAATCGCCACGACGA 58996 36 100.0 30 .................................... ATCAGAACCCACTTCGAAGAAAATCTCTTC 58930 36 100.0 30 .................................... AAGCACCGAACACGCTGATGCGTTTCGGCA 58864 36 100.0 30 .................................... AAATAGAGAAATACTCCTTGTGGTTATCTA 58798 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCTGATATCGGAAAACCGCTACCGTCCGGCGGCAAAAACCGTTTTGGAAGACTACAACGAAACCGTCAAAGCCTACTACCGCGAACGCAGCGGCAAAGATTTGGATTGGGCGCAACAAGTGCGCAACACCCTGGGCCGGCCGGTACGCCCCTTCATGCTGGACTATCTGCACAAACAGGGCTTTGCCAAACGCTAAAAAGAACTGCAGCCTTAAGGGCCACCACTGCAAACGGCGGATTCCACAGGTTTTCGGCTTGGAATCCGCCGTTCGCCATCCACGATAATCGGTTTCACCTCATGAAAAAAAATCTTATTCTTTCATGAGATAATCAACATCACCCCTCCATACTTGTGTTGCAGCTTTTTAAGACAGCCTTTCCCAAATTTCCTCCATTACACCACTACATGAAAACGAAATAGCCATTTTTAATATAGTTACAAATAACTCATCATTTCGCAGTGCTACAATCAACAGGCTGATTTTATGCTGTGCTTTCTG # Right flank : TCACTCAGCGGGGAATCCTTATTTTATAAGGACTCCCCGCTTTCTTTTGTCTAAAAAACGGAGATTAGAACAGCAATAATTGGCCTGAATTGACCTTTTTTTCTTGTGTTTTCAGTTCGCCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCCGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGCAGGTTGGCGCATAGTCTGTTGTGGTGTTTCTGCAACGCATCTCTGCCTTTGACAATCCGGCTGTACACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGCGACGGTGGTAACTGGCAGGTCGAAAAAGACGATGATCCGCATAAATTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGTCTGGCGTTTTTGGCGGCAAGGCTCGGCTGGAATGAGGCCATCATTTTATCTATGGCTGCCAGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //