Array 1 73820-72924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVCG01000024.1 Streptococcus anginosus strain 557_SANG 176_108682_6129625, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 73819 36 100.0 30 .................................... CAGCAATCATAGCGCTCATTGCTGCAACAG 73753 36 100.0 31 .................................... CCATCTCTTGCAGCTGTTGCTGTTGGTGTTG 73686 36 100.0 30 .................................... ATCAGCCATTGGTTACTATGAATTGGCTTT 73620 36 100.0 30 .................................... CCTAAACCTTCTATAACTAGAGCTGAGCGG 73554 36 100.0 30 .................................... AATACTTATACTTTTCTTTCCCTCGATGTC 73488 36 100.0 31 .................................... ACCGCACCCGAAATTAAAGGGCGTAAGTCGG 73421 36 100.0 30 .................................... CTTGCTCTCGCAAGGGTGCGGGGGGGTGTT 73355 36 100.0 30 .................................... GGTGCTGCGAGAGTGCCGCATTTAAGCAGA 73289 36 100.0 30 .................................... TGCAGCAAGGCATATTGACAATCGTTATGC 73223 36 100.0 30 .................................... AATTTTGTTTTACGGATTGAACCGAATGCT 73157 36 100.0 30 .................................... TTCAGCATAATCTCATAGTTATCCTTATCC 73091 36 100.0 30 .................................... AGTTAGCATAAGAGCACAATGAAGAAGCAA 73025 36 100.0 30 .................................... TGCTTTTGAAAAAAATAAAAAGATTATTCT 72959 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATGTTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATAGTAACCTTGAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGACCGTCTAATGGAGAGAAAAATTAAAAAATCGGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTACTAAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGTTGCAAGCCGATGCTACAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTTAAAGGGGATGTAAATACTTCAAAGGACGCGGTAGCAGATAGCGAAAAAGCTGTTGCAAATGCTAAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 47640-48932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVCG01000027.1 Streptococcus anginosus strain 557_SANG 204_53571_3388191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 47640 32 100.0 34 ................................ CACATGCCACTCTCCCCAATGACCTAACCCTCCT 47706 32 100.0 34 ................................ CACCGTCAATAATTGTATCCAAACCATTCGGCAA 47772 32 100.0 34 ................................ AACTATCCGTCAAGTCTATTATATTTAAGCTATC 47838 32 100.0 34 ................................ CAATCGGTCAATAGACCTATATATCATTTGCAAT 47904 32 100.0 34 ................................ AATAACTTGTTTCCCATTCTCAATCTCTTTTTTA 47970 32 100.0 33 ................................ TCAGCACCACCGATATTACCAATGATCCCAGCA 48035 32 100.0 35 ................................ TAATATGGTCTTCATCAAACAGAATATCATTAGTC 48102 32 100.0 36 ................................ ACCTTATATTAATGAATGGAATCTCAGTTCTTTCAT 48170 32 100.0 35 ................................ TCGTCGCCATGCAGGCTGTAGAGAATGACGTCGCC 48237 32 100.0 34 ................................ TTTTGTAGCAGGCGCTTCATTTAGCCACGCGCTT 48303 32 100.0 36 ................................ CTTGACTTCGGCGTTAAAGCCGGGTCTAGTGGAGAC 48371 32 100.0 35 ................................ CATTCACAATGGATGCTTGTCGACCATCGACTATC 48438 32 100.0 35 ................................ TGCGAGAGCTTGCTTGTTTAATTCAACTAGCTCGC 48505 32 100.0 33 ................................ CGTCTTTTACAGACCAACCATAAATTCCGCTTA 48570 32 100.0 33 ................................ TTTGAGTGTTGTTATGCCAAAACTTAATTAAAT 48635 32 100.0 35 ................................ AAACACCGAAAGGGTCAATTGTAGCTCTGGACTAT 48702 32 100.0 34 ................................ TTTATGACAAATACAAGTGGCTTGGCTGCTCTTG 48768 32 100.0 34 ................................ CATACCATGCGCACTTAATAGCGTGTTTAAAACT 48834 32 100.0 35 ................................ TTTAGAAACCGAAGTTTCAGGGATAGCACTGCAAC 48901 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.8 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTACTGCAGGTAGGAGACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCCGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTGGTTTTTATTAAATGAAATAGCTCAATAAATTCTTAGATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCGAAAGTTAGGTTTGGATAAATAGAGAATCAAACTAACATCTGAGGGCAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTATCTGAAATAATAAAGTTCCCTGTATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAGCAGCTCAACAGTAGAGCTGCTTTTTTAACCTATTTGCAAGTTTAAAATTGTGATTGGTCTTGCATTTACGGATGATCAGACATTTAAACTTCAATATTATAAAGATCTGTTGATAAATAGCGCTCACCGTTATCTGGGGCAAGAGCTAGAACTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGAACAATACTGTCGTAAGCTTGAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //