Array 1 88357-89849 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJC01000003.1 Salmonella enterica strain BCW_5838 NODE_3_length_214149_cov_1.93336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88357 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88418 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88479 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88540 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 88601 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 88662 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88723 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88784 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88845 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88906 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88967 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89028 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89089 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89150 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89211 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89272 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89334 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89395 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89456 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89517 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89578 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89639 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89700 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89761 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89822 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105981-107884 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJC01000003.1 Salmonella enterica strain BCW_5838 NODE_3_length_214149_cov_1.93336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105981 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 106042 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106103 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106164 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106225 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 106286 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 106347 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106409 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106470 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106531 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106592 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106653 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106714 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106775 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106836 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106897 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106958 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107019 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107080 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107141 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107203 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107306 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107367 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107428 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107489 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107550 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107611 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107672 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107733 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107794 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107855 29 96.6 0 A............................ | A [107881] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //