Array 1 2422-424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPZ01000016.1 Bifidobacterium breve strain 1900B Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2421 33 100.0 33 ................................. GAAGTTGAGGACTGTGGCGGCACCACTCGTTAC 2355 33 100.0 35 ................................. AACGACTTGCGCGACATGCTGTCACGGTTGCTTGA 2287 33 100.0 34 ................................. TATCTCATGCGCGAAAAATTCGATGGTCGGAATG 2220 33 100.0 35 ................................. CCCGGCCGGTTCGGCGGGCACGTCGAGGAAGGCTA 2152 33 100.0 34 ................................. GGGTGGCGGGCAGGGATGGCGGGTGCCGTCCTTG 2085 33 100.0 37 ................................. AGCGTCATCAAGGACACGTTCGAAAGCCTGTGCGCGA 2015 33 100.0 35 ................................. CCATGCAGGTCACCACCATCAACGACCAGCCCACC 1947 33 100.0 35 ................................. GGTGAGCTGCGCAAGTTCGTCGAACTGACGGCAGA 1879 33 100.0 35 ................................. GTCTATGCCAGCGAGGACACCGCCGGCAAATGGAA 1811 33 100.0 35 ................................. CCCTGCGGCTCCTGTGCCTCGTGTCGAGCGAGGCG 1743 33 100.0 36 ................................. GTGATGATGAATATGCCGAGCAAAAAACAAGGAACA 1674 33 100.0 34 ................................. ATGAGCCGGGTGACGAACCGGCCGACGGCCTCCA 1607 33 100.0 33 ................................. TATGTCCAGCTCATGCTCATGCTCAAATACGCC 1541 33 100.0 35 ................................. CCATTGTTGCGTGTTGTGGAATGGCGTGGTTTATT 1473 33 100.0 34 ................................. AGACTGTTTATCGCGCGTCTCACGCGCTTGCGTT 1406 33 100.0 35 ................................. CCTGATTTTAACGCGCCGAACGGTATCCCCGTAGT 1338 33 100.0 36 ................................. ACATTATCCACCGTAATGGCGGAATCAAGATGTATC 1269 33 100.0 36 ................................. ACTTCGGCGCGCGCCCATTCGAGCGTGTGCGTGCCT 1200 33 100.0 36 ................................. CCTGATTATGAATTTCGGACAACCAATAAAATAGCC 1131 33 100.0 32 ................................. GTCAAAATGTTGCGGGCGGACACCGATTACAG 1066 33 100.0 34 ................................. ACGCTGTCGGCGGTGGTGCTGACGGCGCGAACCT 999 33 100.0 36 ................................. ACCCACAAGCGGGGCATGACCCATGAAGCGACCATG 930 33 100.0 36 ................................. TCAACAGTTGCACCGTTATGGTGCCGTCATTGTTGG 861 33 100.0 34 ................................. CTCAATGACGCCGCGAGTTTCTCGCCCTCGCTTT 794 33 100.0 33 ................................. TGCTGAGCCGTGTAATGGCCACCGCCTCGTCCG 728 33 100.0 33 ................................. CTTGAAATCCGGAGTCAACACGTTGTTGTCATT 662 33 100.0 37 ................................. GAATACGGCAAGGACCTCACCCAAATCAAACGCGACC 592 33 100.0 33 ................................. TCGATACTCCGATTACACGCGACAGCGTAACAC 526 33 100.0 36 ................................. ATGGTGATGATGATTCCGAAGAACATGCTGATGACC 457 33 90.9 0 .............................TTT. | G [426] ========== ====== ====== ====== ================================= ===================================== ================== 30 33 99.7 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TGTCAAATTTTTGTGGGCCGTTTCGGCGTTTCTTTTAGTCCGTTTGAGCGGTTGTTTTTAGGCCGTTTCGGCTTTGGCCAGTCCTGTGGGTTGTCGGTTATTGCATGAGGGCGTGGGTCTTGCGCCAGGACTCGCCCTCGAATCTGATCATCCTGCCGTGGTGGACGGTGCGGTCGATGATCGCGGCGGCCATGTTGGGGTCGCCGAAGATCCTGCCCCATCCGGAGAACTCGATGTTGGTGGTGTAGATGATGCTCTGGGTCTCGTACGCGTTGGTGACGACCTGGAACAGGAGCCTGCTGCCTTCCTCGTCGATGGGCACGTAGCCGAGTTCGTCGATGATCAGGAGCGGGGTTCTGCCGATCATGGCGAGTTCCCGGTCGAGCCGATTGTCCGTTTGGGCGCGTAGGAGCCGCATGACCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 121117-119789 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPZ01000013.1 Bifidobacterium breve strain 1900B Contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 121116 33 100.0 36 ................................. ATCCGCGAACACCGCGCGCTTATCGAAAGACTCAGA 121047 33 100.0 36 ................................. CGGTTCTGCGGGTGTCAGGCGTTGAATGCGTCGCTG 120978 33 100.0 35 ................................. ATCGGTGTTGCAGTCTATCCGTGACCATATCGCCA 120910 33 100.0 35 ................................. ACCGGCGCTCTGGCCAACATCAAGGCCGCGCTCGG 120842 33 97.0 35 ............A.................... CAGTCAACTTTGGTCATGTCTCCTAAATCTGGTAC 120774 33 100.0 34 ................................. AAGCCATTGAACGTCAACGGCGAGCCAGTGCCAG 120707 33 100.0 35 ................................. CGCATGGTCGTGCTCGACCCACCGCACTTGCGCAA 120639 33 100.0 36 ................................. AACCTCCTGTCCGACTATGGCGACGCGGTGGTGCGC 120570 33 100.0 34 ................................. CTTGGCGAGCGCGGCCTGTGTCTTGCGATGCCGT 120503 33 100.0 35 ................................. GTCGCAGGGTGGCGTGTCCGACAAGGACACCGCTC 120435 33 100.0 35 ................................. GATTCCCGTGTCTCGGGCCGTGCGCCCTGCGCCAT 120367 33 100.0 35 ................................. CTCCACGGGTCTGTCCGCCATGATTATGCCTCCGC 120299 33 100.0 35 ................................. GCGCTAATCCCCAGTGGGGTAATGGTGATTGGATA 120231 33 100.0 34 ................................. CACGACACCACCATCCGATATTTCAACCGAGTCG 120164 33 97.0 36 ............................A.... TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 120095 33 100.0 36 ................................. CATTGTGAGTGTAATCGGCAGTGTTGGTTTTCCCAT 120026 33 100.0 35 ................................. CAAGTTCGTGAAAACATTACAAGCGGATACCGATT 119958 33 100.0 35 ................................. CCGATTCCATCCCTGAGGGTATCGCGCGCGACGCC 119890 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 119821 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 98.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CCCTCTCCGAAACGAGCCGGTCGTACACGCGCTTGGCGGTGTGCCGCTGCTTGCGCGGCATGAACCGGTCCGCCTCCAGCCACCCGTCGACCGTCGCCTTGAACGGGTCGAGCTTCGACGGCCTCGATGCGGAGTGCTCCGGCTTGGGAGAGCAATCCTCCCTCCCGGCGTATTTCGCGACCGTGTCGCGGGCCACGCCCACCTCTTTTGCGATGCTTCTCCATGACACGCCATGCGCGTCAAGCACCCTGATACGTTGTTGTACGGACACCGGTACCGTCATTCCTTTCCTTTCCCGAGAAACCGAATGGTTTGCTTCCGACTCGGGAAACTAGTACGGGCAGGACGGGCCGGTGTTCATTTCTCGCCACACGCTGAAATGGACTAAAACCTGCCGCTCATCTGGAGACTTTCCACACGCTCACACGGCCCACTTTCTATTGAACAGACACACGTGGATTGAAATGCGTCGATCCAGTTCGCGCCGTCCTGCGCTCCCT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //