Array 1 58-480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAZ01000012.1 Lactobacillus selangorensis strain DSM 13344 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58 30 100.0 37 .............................. GCGTTTTAAACGCGGTCCCAATTCCAGAGATTACTTT 125 30 100.0 35 .............................. AGAATGAAATTCGATTATGTTCTCGACTTAGTAGG 190 30 100.0 35 .............................. TTTCTTGCTTTCAGATGATGAAGAATCAATGCTTG 255 30 100.0 36 .............................. CAGATCGGTTCCCCCGTCGCCCCAAACTGTGACAGA 321 30 100.0 35 .............................. CCTATCGTAGTGCCGAGAAAGCTCTGCAAGAGTTA 386 30 96.7 35 T............................. ATTTCTCCGTCCGCTCCGGCAATTGCTGTATAGAT 451 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 ATTTACATTCCATATTGTTTAAATAAAAAC # Left flank : CATATTGTTTAAATAAAAACGAATCAGCTTCTTGATTGCTGTTTTATCAACTTTCATA # Right flank : CTGCACCTTTAATATCCCCTATTATATCAGACTTTAATCACTAATAATTGTCGATCGCAAAATTTAAGCAGCGCTTTCTTAACCAAAATAGATGTCAAAACACACTAATATTGATCTGGCAGTCTTAAAGCTATCTGTCGATTTCCTGTTGTTTTAACTGCATTACCGATCGACAGTTCCTAATCTTTCCATACCGAATTAAAACCAAATTCAACCCCATAAAAAAGGACCCTCCGCAACCGGAGGGTCCTTTCATTGGGTTCTTTAAATTAAGCTTTTAAGTTTTCGTGGTCTTCTTTTGAAAGGCGTTCGTTCAACTTGTTGGTTAATTCTTCATAACCAGGACGGCCTAACAAAGCAAACATGTTCTTCTTGTAAGCTTCAACACCTGGCTGGTTGAATGGATTGATGCCATTCAAGTAACCAGATACAGCAACGGCTGCTTCGAAGAAGTAAATCATGTAGCCTAATGTGTAGGCAGATTGATCAGGAATCTTAAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATATTGTTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 499644-499086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAZ01000001.1 Lactobacillus selangorensis strain DSM 13344 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 499643 30 100.0 36 .............................. AACATATTGATCATAGGTAGTGTTGATTGGTTTGAC 499577 30 100.0 36 .............................. GAAGATGTGCAAACGACTATCAACTTGCTGAAGCGC 499511 30 100.0 36 .............................. CTTACTATGATTGATAGTTTTTTGTTGAAGAACCAC 499445 30 100.0 37 .............................. GTCATTAGAGTTGCGCCCATTTCGGTGGAAACAGAGC 499378 30 100.0 35 .............................. TTGTGGTCGGTCAGGAAGTTGAGGGCGACGGGCTG 499313 30 100.0 36 .............................. ATGTTCTTGACTGCGGCCTCGGCCTTCTTCGATAAT 499247 30 100.0 38 .............................. TTGAAATTTGATGACAAAGGCAACTTGGTCATGGATGA 499179 30 96.7 34 ........................A..... TAAGCGCGTCATTGAACGATCCGTTTAGGATCAA 499115 30 76.7 0 .............T..AA..A....C.TT. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.0 36 CTTTTTATTTAAACAATGTGGAATGTAAAT # Left flank : TTCGGGAGATTGATTCACAAGATGTGATTCCAAAATCGGTGTATTTGGAGAACAAAGGAAAAATTGATGATCAATATCGTATTTTGAATCCAGATTATTCCGATAAGAAAGTGGATTGGCGCAAGAAAAACAAGGCAATAGTAGCATTAAAAGATTTCCTAGTGCCAGTGACTCATTTTCAATTTAGTGCTTTGAGAAAAGCAGGGCGCATTGATGAGGATACTTTAGGAAAAGGAAACTTCAGATATACTATTGCGGATACTCACTATGATGATGAGAAAGGTCTTTCAATTGAAAAAGAAAGTAAAGGGGATAATTTTATTTAACTGTCGATGTCAAATATTGTGAAAAATAGGGGAAATCGACAGTTTGTCAAAATGTTGAAATGAATACATTTGACAGCTTGGTCTAAGAAAGGATTACTTTTTTAACGCAAAACAATCAGATCGACAAATCGGTTACTTTGAAGATTGATATATTAGTATCTAATAGGACAATCC # Right flank : TTTATTGGCAATATAAAGCGGAATTGTAGCAGCTTAAACATCATTTCTGCCATCGGCAAATTTACGGCAGGCAGGACTCTGTTATGGTTGTGCATTTTCTCGCAGTCGTGATATCCTTAAAGTGTGACAGGGTTCTAACAGCCCTGCCAGTTGGAAAATTTTGGTAAACATGATTTTCTGACCTCCTACAGTTAATGAAGCATCTGCCTGTGCAGGTGCTTTTTTTGTTTTGCAGTGGCAACGATTATCAGCGGTCCGCTGATTGCCGTCACCTTTTTGAAGGTTCATTTATTAGGTGCGTGGCTGCCGGTGTGGGGACCATGGAATCGTTCGTTTTTTGCGTTAGGAGCTGATAAAATCAGCTGGTCGATTTTGGCGTTAACGGCCGTAGTCGGAGTATTGGTCGGCATGTACAGCAGTTTCCTATTCGGAAGACAACAGCAAGGTTGATGAATGTGATATCAGATTAAAAAATTGAATTGCGAAGGATTTAAACGGTC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATTTAAACAATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 509706-508427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAZ01000001.1 Lactobacillus selangorensis strain DSM 13344 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 509705 30 100.0 35 .............................. TTCCAAGATGACACAAGGTCGATGTCCCCCGAAAC 509640 30 100.0 36 .............................. TCTTACGCTATCACGCTCAAGCGCCAGCATCGAAAT 509574 30 100.0 35 .............................. GATACGGACGACAATCAGCAGAAACGGATGGGCAA 509509 30 100.0 37 .............................. TAATGTGCGGTGAGATACATGTCTTCATCTGCACTCC 509442 30 100.0 35 .............................. AACCTCAACAACGTTGATGCAACGGGGGCTTACAT 509377 30 96.7 35 ....................A......... TACGCTGCTTCATCTCTTTGCGTCTACCCATTCCG 509312 30 100.0 36 .............................. TCTTCTGCTGATTTTGCTCTATATCCTCGTTACATG 509246 30 100.0 37 .............................. GGTTGTGATGAAATTCAACGCGTTTTGAATTTGAAAA 509179 30 100.0 36 .............................. GGTGGTCACACTGTTTCGGTTGACTGGTCCGGCAAT 509113 30 100.0 36 .............................. CACCCAAAAAATCCCTCTCACCCCAAAAAAATATAA 509047 30 100.0 37 .............................. GTGTGTCCGAAAGCAAATCTTTCAAGATGTCTTCATT 508980 30 100.0 37 .............................. AGTTTTCTTTCTTGGCATCGTGCATCTTGCGAAAATC 508913 30 100.0 36 .............................. CGAGGTGTGACTGTTCCTTGCTCGATCCGTTCAAGC 508847 30 100.0 36 .............................. TTTGGTAAATGCCGTGACAACGTGAATGTTTGATAG 508781 30 100.0 35 .............................. GTTATGGACGGTCGATTGTATCGTATTCAAACACC 508716 30 100.0 37 .............................. GACTTACTAAAAGAGCATAAAACTGGAATTTTAAGAA 508649 30 100.0 36 .............................. GCAAAAGAACGTGAGAAAATCATGGCTGATTTTAAA 508583 30 100.0 36 .............................. AAAATACACCCCGATCCCTTACTTTTTGATAGCGTC 508517 30 93.3 30 A............................C ATGCAAACAAAATTACAATTGGCTGGTCTA 508457 29 90.0 0 ........C..........A....-..... | T,T [508435,508441] ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.0 36 GTTTTTATTTAAACAATATGGAATGTAAAT # Left flank : TAAACAATATGGAATGTAAATAGGTTAGTGTAACTATGCTTCTTAGTCAGGTGGCCGG # Right flank : GTTTTCGTTATAAGAAAACATATGCAAGATTGAGGCTAAAAAAACTAGCGATTAAGGAAGTTTTGTTGTATTCTATGTAAACGGATACATAGATAAAAAGAATATAAATATTAAGTCATTTTGTTCATTTATGAATTTTAATCCTTCATGATTTTATATTTGTTTATTACTTCTTAAAAATATTTGACGAAGCATAATATTGTTTTTATAGTTTAGTTATGTTGAACGTATGTAAACGTTACGCAATGTAAATTCATATTTTTATATGTGCTTTATTCTTTTATTTAAACAACATGGAATGTTACATGCCTTGTTAAGGAGGTGATGCTTTATGCAGATAACAGGAAACGAGGTCAATTATTATTTTGTTTGCAAAAGAAAGTTATGGTTATTTTCACATCAAATTAACTTTGAGTCTGAAAGCGAACGAGTTCAAATCGGCAATGTGATTGACAAAGAGACTTATGATCGTGCGCATAAACAGATTATGGTAGATGGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAAACAATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //