Array 1 163-4357 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWL01000014.1 Pediococcus parvulus strain JCM 5889 sequence14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 163 36 100.0 30 .................................... TGATCAAATCCATCATATTGCTTTGGCAAT 229 36 100.0 30 .................................... AAAAAGTGTTAGAAAGTGTAATAAAACTGG 295 36 100.0 30 .................................... TATCCTTAACGGGTTTTACATCAAAGATGG 361 36 100.0 30 .................................... TGCAGGGTTGGAAACGTAACGGACTAACTG 427 36 100.0 30 .................................... TAATCGTACAGTTTAAACATTAATTTCACC 493 36 100.0 30 .................................... GTGGATCAGCAGAGACAGCTGGTACAACAA 559 36 100.0 30 .................................... TCGCTGTTTTATCAGTCATTTATTTTTTCC 625 36 100.0 30 .................................... TCAGCAAACAGTTTACCAACTACCCGTCAA 691 36 100.0 30 .................................... CATTAACTCGTTATTCTGCAAAACTAAATA 757 36 100.0 30 .................................... TGATGTACCCACGGGTTAAGTTTATTTCGC 823 36 100.0 30 .................................... CCTGTTTTGATTAGCCTCATTTTGTAATTG 889 36 100.0 30 .................................... TAACGACATCATCTTTTAAATCATTCATTT 955 36 100.0 31 .................................... TGACTATGTTAGAGCTTACCAGAGGGGCCAA 1022 36 100.0 30 .................................... TAAAACATTCTGAGTATTCCAACGTAGCGG 1088 36 100.0 30 .................................... GATGAGATGATTAATAAGTATCACGTTGAA 1154 36 100.0 30 .................................... GTATCATGAGCATAAACAATGGTTCGCTGT 1220 36 100.0 30 .................................... AGCAAGAGTAATTTGACCGGCAAAAAATGG 1286 36 100.0 30 .................................... ACACGTTCATGCACAGGCTCGGACGGGAGC 1352 36 100.0 30 .................................... ATCGGATTTACTGATTATACATCAAAAATA 1418 36 100.0 30 .................................... ACCTTAGTGGCGCATCGTCACCCCAGATAT 1484 36 100.0 30 .................................... AGGTGGCAAGGCACAATACAAGTATCCGGA 1550 36 100.0 30 .................................... GCTGTTCATCTGCGTGTACCACGCCTTTGT 1616 36 100.0 30 .................................... CCAGAGGCCGAATAAAAAAGACCCTAGCAA 1682 36 100.0 30 .................................... TAAAACAATAGAAAATATTCAATCTGATAA 1748 36 100.0 30 .................................... GTGTAGTCGTATCACTTCTGACCAGTATAA 1814 36 100.0 30 .................................... TCCTGGACCATCTGAAGCTCAACAACAATT 1880 36 100.0 30 .................................... TTAACCATTTAACAGACGGCCCCATCACCA 1946 36 100.0 30 .................................... CCCACTGACTAAGCCAAGTCGAGCTTGGGA 2012 36 100.0 30 .................................... CATTAGAAACAGGAACATAAACAATCCGTT 2078 36 100.0 30 .................................... CCATAGGTTAGTATTAAAATTAAAGAATCT 2144 36 100.0 30 .................................... ATATTCTTAGTATTAAATTGTTTCTCAATT 2210 36 100.0 30 .................................... CATCCGTTTCAGTATTCCGCCAGCCTATTA 2276 36 100.0 30 .................................... AGTGATACTGATAGTATTAAGATTGAACAC 2342 36 100.0 30 .................................... TAATGGTTCTCATGATTAAACCGTCCAGTT 2408 36 100.0 30 .................................... CCAGGTTCTTACTATTCCACGGAGCATCAA 2474 36 100.0 30 .................................... TGTAAGTTTTGTCATAGTTGTTTTGCCTCT 2540 36 100.0 30 .................................... CAACATGATACAGTCCTTCATTTTTACCAG 2606 36 100.0 30 .................................... ATGGTTGGACTCCTGCTTGAGGATCCTTTT 2672 36 100.0 30 .................................... GTGATCCAGCTAGTCTTAGCCCAATATTAA 2738 36 100.0 30 .................................... AAAAAATGTGGTGTTGAATACAGGTTCAAA 2804 36 100.0 30 .................................... ATCAAATGATGATTATTGGGGTCAGTTTAA 2870 36 100.0 30 .................................... TCGCACACAGGGTTTACTTTAGTGAACGCA 2936 36 100.0 30 .................................... GCGGCATAGCTGTTTTAATTGGGTACATTG 3002 36 100.0 30 .................................... CGTACTTGGTTATGCAATTGGAAGAGATAA 3068 36 100.0 30 .................................... TCACTGTGTGCTGTATTCGGAATTTTTGCC 3134 36 100.0 30 .................................... TAATGCTCGTGATGATGCCAAGGATGCAGT 3200 36 100.0 30 .................................... ATCAGTGTACAGCACAAGTCTATGGGCCAA 3266 36 100.0 30 .................................... ATATTATTAACGCGGTATTTGCATTGCTGT 3332 36 100.0 30 .................................... ATTAATGTTTGCATAATAAAAAAGGGGATA 3398 36 100.0 30 .................................... GCAGACTTCCAACTCCCACTCAAAACGCTT 3464 36 100.0 30 .................................... CAGAGCTTGAGACTACCCCACTAGATGAAC 3530 36 100.0 30 .................................... TTGCCTCGGATTCTTCCGGGCCACAGCCAG 3596 36 100.0 30 .................................... CCCAGCCTGTTGTGCTGCCCATTGGACTAA 3662 36 100.0 30 .................................... TTGTTCGTCTGTCTTAGCTTTGTATTCGTC 3728 36 100.0 30 .................................... TCAAGTCATTTTCCTGATTATCAACTTGCG 3794 36 100.0 30 .................................... TAACGCGAAAGCACAGTATAAATCTCTTCC 3860 36 100.0 30 .................................... CTTGTTAATCAAAACCTGTGTATCGATATT 3926 36 100.0 30 .................................... AAACTTTATTGTGTGTGCCACATACACAGG 3992 36 100.0 30 .................................... GCGTCACAAACCGGTAGTAAAGCTCATCAT 4058 36 100.0 30 .................................... CTGGACAGGTCAAACTGTCCTTGCATAGTG 4124 36 100.0 30 .................................... AGCGAACAAGGATAATCAAGCCGATACACA 4190 36 100.0 30 .................................... TCTGTTCACCATATTTCGTTTCGTTCAATG 4256 36 100.0 30 .................................... AGCGGAAGTCTATGACGGCATATACGAAAG 4322 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 64 36 100.0 30 GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : TGAGAGCTTTTATAACAGTGCTCGAATTCACAGTAGCATTGATTATTTAACTCCAAATGAAAAGGAAAAATTAGTCGCTTAAATTATACATAAAATGTGTCCAGATTCTTGACCTAAATCCACTTCTAAAACTGAGGAGTTGGGCTATATGCCATCAAGGTTG # Right flank : CCGTTTTTTTATAATGCTATTCTCATAGTATCTAGTACCGCCAATCAACAAAATCCTGATCAACGTAGTAATAACGGCATTTATCAAATTCTTCATGATTATCCATTTCTGAGAATGAAATAAATAGGATATTCAAATCAAGTGACTTAATTAAACTCACCAATTCATCAAATTGGCTGACACTGAGATAATTTTTCACACTAGTCAAGACAAGTACTTTGGTTTCCTTTAATTCAGAAGCAGTTTTTAACACCGTTTCAATTATACCATATGGATCTTGCTTTAAAGCACTTACAAAGCTAACTTCACAGTACTTTACCAACTTAATCGGATCAAATTCGTCGTTAACCTTAAGAGGTAAATCTAATGAAAATGTTGCATCAAAAATTAGTGATTTTAATTGACTATTGATTTCAGTTAGTTTTTGCCTAGAAGCATCATCCAATTTTGACACGATTTGCTTTTGCAATTGGCTTTGGTACATCTTATTTAAGTCTACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 26560-20884 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWL01000014.1 Pediococcus parvulus strain JCM 5889 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 26559 32 100.0 35 ................................ TGTTAGCAATGCTAGCAATATTATGGTTAAACAAC 26492 32 100.0 34 ................................ GACTCCCTGATCTTTTTTTGTTCCAAAAAATTCA 26426 32 100.0 34 ................................ AGTTTTGCTAACATAACCATATTTTGGTGACTTT 26360 32 100.0 38 ................................ TGTGTGAACCCATCTTGTGCAACTTTGGCATTGTCGTT 26290 32 100.0 34 ................................ ATTAATTCAAAATAATCATAAGTTGTTTTGATTA 26224 32 100.0 35 ................................ CACATCTCTTAAATGCATCCTAAAAAATCGGCCTT 26157 32 100.0 33 ................................ TTCGTTTTCGAAATATAAGATTCCGAATGCGGA 26092 32 100.0 37 ................................ TCTTTTAGCACTTGATAAAGCACGTTGCCAAACGAGC 26023 32 100.0 34 ................................ AACACTATCATCCGATTTGAGTACAATGCGTAAA 25957 32 100.0 36 ................................ AGGTTGGTGATGATGGCAAAGTTACCTATTCAATCG 25889 32 100.0 34 ................................ CAGTCTTAATCTTAACTTTTTCGTCTCTTTTATT 25823 32 100.0 35 ................................ ATCCAATACAGCCGTGTTACAGTGATAACTATCCC 25756 32 100.0 39 ................................ GAGCTTGATCGAAGCTACACATCTCCACCGCTCAAGAAT 25685 32 100.0 36 ................................ ACAATGACGGTGGAGCACTAAGTAACGTTACTTTTA 25617 32 100.0 34 ................................ AAAAAGATTCACAAGTACTTGTATGGTGTGAAAT 25551 32 100.0 36 ................................ CAATCCGTTCCTTTACGACTAATCAGATATCCGTTC 25483 32 100.0 34 ................................ CATTTCCACTCCTGCAGGCACACACACGTTGCTT 25417 32 100.0 35 ................................ ATCAAGTTGTTGACAAAGTTTAACCGATAAACTAA 25350 32 100.0 33 ................................ ATATAAAGCTAAGCATAAAGACGATGCCGATGA 25285 32 100.0 36 ................................ AATCTTACACCTCCTATTTCTGATCACGATTCGGCT 25217 32 100.0 34 ................................ CAGCCATTTACGGAGCAAGTCCAACTGCTAAACA 25151 32 100.0 34 ................................ TTTAATCTATGTTATTATTATAACTCTAACTAGC 25085 32 100.0 34 ................................ ATGATGTAATCTGAACACATGATCAAAATCGTTT 25019 32 100.0 34 ................................ CCTTTTTTAAGAAGCAATATCATGGAGTTCCATT 24953 32 100.0 35 ................................ TTTTTTAACCAAGTACTGTAACCTTTTAACTTCTG 24886 32 100.0 36 ................................ CGTTAAATTAGCAACGTCCGGTGACTTGAATACCTT 24818 32 100.0 34 ................................ TCAAAATTATTAGGGATGAGTTAAATGCTAAGTT 24752 32 100.0 35 ................................ TACGGATACCGGCTTCAAAGAACCTAAGATTCTAC 24685 32 100.0 33 ................................ ATGTGACACCTGGTCATTTTGGTGTAGATCCGG 24620 32 100.0 34 ................................ TTCAATGTTGCGGCTGTTGAACTAGATTTAAGTC 24554 32 100.0 35 ................................ CAACCACTCGTGGCTTTGAGTATAAGGAAGTTTCG 24487 32 100.0 38 ................................ AACGTACTAATCATTTGAGAAATTCTAGAAGCGGAAAC 24417 32 100.0 33 ................................ TCTTCGTGATATTCTTCGTTAAACTTTTGAACC 24352 32 100.0 33 ................................ TGTTCAAGTTTCTGCTGATGTTACGCGTTTTGA 24287 32 100.0 36 ................................ GATTTAATCAGTGACGATGCGATTCTGGATTATAAA 24219 32 100.0 36 ................................ CCCCTTTCCTTAACCTTATGTACACATTGTAATACT 24151 32 100.0 35 ................................ GTCCAGGCGTTAACGAATTCAATGACGAACAAGGC 24084 32 100.0 37 ................................ AGTGACATCATTTATGATATTGCCAGAATGTTTGGTT 24015 32 100.0 35 ................................ TGCATACTATCAATGGCGCCACCGGACATATTCGC 23948 32 100.0 36 ................................ TATGGTGGCACTAATCTATCTCAGAGCACTTACAAT 23880 32 100.0 37 ................................ AGCCATAGCTGGTGCACTAGGTAATACCACATTGCCC 23811 32 100.0 33 ................................ AAATCACAGGAGTCGGTAATTCTAGTATGCGTG 23746 32 100.0 35 ................................ GACATAACGGCTCTTTTGGTCTGGGCAATAAGTGT 23679 32 100.0 35 ................................ GTTTTGAACGTGACGGGAAAACGTATGAATCAAAG 23612 32 100.0 35 ................................ ACTTTATATTGGTTCATAAATTTGGCCTCTTAATT 23545 32 100.0 34 ................................ ACCAGAAGAAACAGCTGACTTATTATCTGGATTC 23479 32 100.0 36 ................................ CGAATACTGCACATAGCGAGTATCGACGTGCATACG 23411 32 100.0 35 ................................ ACTCAAGTCAAGCAATGAAGATCTTACCTCACAAG 23344 32 100.0 35 ................................ TGCTCGGTTTTAAAGTCGCCGTGGATAATTGAACT 23277 32 100.0 36 ................................ ATTTAGTAAAATGAAGCCCTCTGTATGTGTTCCATC 23209 32 100.0 38 ................................ TATAACAAAATTTCGGCTATGCGACAACAAGAACAAGC 23139 32 100.0 38 ................................ CATCAAATAACGAGTAGTCAGGATAAACGTAGTAAACA 23069 32 100.0 34 ................................ CAAAAGAGGAACTATAAAATTTAAAAATAATTAT 23003 32 100.0 35 ................................ AAGCAACAATGCGTTGTATGCGATATTTGCCAAAT 22936 32 100.0 36 ................................ ATTTGGTTTTGCCTTCTTTAGGACTTAAAATGTAGC 22868 32 100.0 35 ................................ TATTGAATTCGACAATAATACAGGTGAAGTAACCG 22801 32 100.0 34 ................................ TTACAGCATGGAGCTTATTATGTTTCGAAGGTGG 22735 32 100.0 35 ................................ ATGAATCCACGCATGGCTAGTATGACAGCCAAGCA 22668 32 100.0 35 ................................ TAACTCAGCAATGGTCATAGTAGATCCATCAGTCA 22601 32 100.0 35 ................................ AAAAATGGAATGATTTAACGCCACGTATGAAGACG 22534 32 100.0 35 ................................ TACTCTGCACTCTCATCACCATATCTAATCCGATC 22467 32 100.0 33 ................................ TTGAAGCGTTTACTGCTAAGTCATCCACATCAG 22402 32 100.0 34 ................................ AAGATAATTGCGGACCTGTAAGGCTAGCTGATTG 22336 32 100.0 37 ................................ ATAAATAACTAAAAAAGTGTGACGGATGTGACGGACA 22267 32 100.0 35 ................................ AAATGCTCAAAATGATGCTAGTTCAGCAGTTGCTA 22200 32 100.0 36 ................................ TGCTATAACCCCAATCTGATTGATGGTGTGTACCTG 22132 32 100.0 37 ................................ TGATTAATCATTATTTGCTTGCCTCATTCAGTCGATT 22063 32 100.0 35 ................................ AGCCTTTAAAACTGAAACAGCTGAATCATTTTGTT 21996 32 100.0 35 ................................ TTGCACCAGATAACAATTGATCATGCACAGATGTC 21929 32 100.0 34 ................................ ACGATATTCGTCAGCGTTTTTGCTTTCGATTCCT 21863 32 100.0 37 ................................ ATTCCAAACATCCACCTTTCTACTTGATGTGATAATT 21794 32 100.0 36 ................................ AATGATGAAATATATTTAACGTCAGGAAAATGGTTT 21726 32 100.0 35 ................................ ATTAGTTCCATTGGCAGTACTCAAAGAATCAAAAT 21659 32 100.0 35 ................................ ACGATAGAATTAGACTTCCAGGTGAATTTACCAAT 21592 32 100.0 36 ................................ TGATTTAGATGATTCAACCCAAGACACAATTATTAA 21524 32 100.0 35 ................................ CATTAAATTTAGTTACACTACCACGTGCTGTTCCC 21457 32 100.0 35 ................................ GTTCTAAAGGCGGGGACGACCTTGCTAAACTTATC 21390 32 100.0 36 ................................ TTGGTGCACTCTTTATCTTTATACGTGTAAACAGCT 21322 32 100.0 36 ................................ TCCGATGTTTTTACGATAAAATCCCGATATTTTTCC 21254 32 100.0 35 ................................ GCCAACGAATACCCGGCAGAATGGTCAAGCAGTGT 21187 32 100.0 36 ................................ ACCACTTGGCTATTGCATGTGGCAAGCTTCTAATTC 21119 32 100.0 35 ................................ ATATAATGAACGCCAGCCAGCAAATCATCATAGCT G [21102] 21051 32 100.0 36 ................................ AACATCAAAACGATCAATCACGCGAATCTTGGTTTG 20983 32 100.0 35 ................................ AGGTGCCCACACACCAGGTTCTGGCTGGTCTGTTA 20916 32 81.2 0 ..T.............CC.T.....AG..... | C [20889] ========== ====== ====== ====== ================================ ======================================= ================== 85 32 99.8 35 GTCGCATCCTTTATGGGTGCGTGAATTGAAAT # Left flank : AATACAGTTGCGAAATTGTTTCAAGTAATCGATTCATCAACAACTGATGTGATTGTTCAGTATGGTGAAGGGAAAAAGCTCGTAGCTGAGCTTATTTCCCAAAAAAGCAAATTTGAAAGTATTTCAGGACTTTTAAAGCAAGTTCAGAAATATTGTGTTTCGGTGTATGGGAATCGGGAAGAACCTGGTAGTTATCTAGGTAAATTAATGGCGGATGGCAGTGTACGCTATTGCCAAGAACAAGATATTTTTATTGCTGAAGATGGATCGTATAGTGAAAAATTTGGTTTAGGCGAAGGAAAATTTGATTCTTTAGACTACTAATGCACTTAGTTAGTATTGTGGTGCGAGTATGAAGTGCACATAAATGTGCTAGGCAGTTCGCACCAATATTTGCAGGAAATGATTTATTTTTAGTTGTATTTGTTCGTTACATTTTTTTAATTATGTCCAGCCGTCTAAATATAGATATTTCTTCACCAGATATACTATATTTTGCG # Right flank : CAACATTATTACTGATGATAATATTAGTGACTTATCATATTATTTCAGTTTATTGACCATACACGAATGAATCATTTAGAAGCTAACCATACAATATCTTTAAATAAAGCGTTTACATTTTTAGAATCGATGATATTATGATGTTAGAGAAACACTAAAACGTGATGGTGGAGATGAAAGAAGTGGAATATTCGGAAGATGATTTTTTGATGATATCCGGTATACAACATTTTCGTTTTTGTCAGCGACAGTGGTCGTTAATCCATGTTGAACAAGCATGGCAGGATAATCTATTGACCTATGATGGGCAAATTCTACATACAAAAGCTGATCAACCTGAAATTCGGGAAAAAAGAAAAAATAAGTTGATTGTGCGATCTTTACCAGTTCATTCTCGTGAATTAGGTTTAACGGGTATTTGTGATGTTGTTGAATTTGAGGAGAAGCCTGATGGCGTGTCGATCTTTGGCAGTGAGAAAAAGTACTTGCCCAAACCAGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 160-1911 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWL01000033.1 Pediococcus parvulus strain JCM 5889 sequence33, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 160 36 100.0 30 .................................... CTCATATCTTGGGAATTTGCTTTGCCACCA 226 36 100.0 30 .................................... ACCTCGGTATGAGGTAGCTTTGTGTATTCA 292 36 100.0 30 .................................... ATGTTAGTCGTATGCCCATCAACAGTTCTC 358 36 100.0 30 .................................... TTGCACGATATAAGAATTTGCGTAAGTTGT 424 36 100.0 30 .................................... CGATGCGCTCATCCTTCGCGAACTCCTTCG 490 36 100.0 30 .................................... TCTTCATAATAGAATATATTCTATTGTAAG 556 36 100.0 30 .................................... AGTGGATTAGTGATGAAACTGGGCTTGATG 622 36 100.0 30 .................................... CTAATATAGGCATACCCTACAAACGCCCCT 688 36 100.0 30 .................................... TTCATCGCTGGTTTTTCTTTGCCCTCTTCG 754 36 100.0 30 .................................... GATTTGAGCTGTTTCTTAGCCTCGTTGGCA 820 36 100.0 30 .................................... AAATTGACTGGTACTTAGATGTAGATGTTG 886 36 100.0 30 .................................... GTGATGGGGCAATAACTAATGCTAAAATAG 952 36 100.0 30 .................................... ATTCAGTCTGTTGCTATAGCCGTCAATACT 1018 36 100.0 30 .................................... CAGATACCTCTGATTTTTGATATCCAGCGT 1084 36 100.0 30 .................................... ATCCGCACTTGCCAGTGAAATATAAACCGC 1150 36 100.0 30 .................................... TGTTAGGAAGTAAGAAAACCTAAAAAAACT 1216 36 100.0 30 .................................... TGGTACACCATCGTGAATATTTCCTGGACA 1282 36 100.0 30 .................................... TGGCTTTGCAGTGTGATCAACATGACACCA 1348 36 100.0 30 .................................... GCAGCATCAACCAATGAAGATAGCATTGAG 1414 36 100.0 30 .................................... GTTTAACTGGTGATACATTGGTTGAAACTA 1480 36 100.0 30 .................................... CTGAAAATTATCCAATTACTTTTGATATTA 1546 36 100.0 30 .................................... TATTTGCTTCTAAAGTGAGTGCAGCTACTG 1612 36 100.0 30 .................................... TTTACGACTAATTATCGTGCAAACAACGTG 1678 36 100.0 30 .................................... TATTTTTTTCTTAGGAACCTCTATATTTTT 1744 36 100.0 30 .................................... AGCACAATACCACGTGGAACTGTAGTAACA 1810 36 100.0 30 .................................... TCACTGTTGGCTGATTGTTCTTCCACCATG 1876 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : CATCCTGGTACAGCTTGACAATCATTTTTCTAAAATCTACTGAGTACTTTTTATTGGTCATAAAAACACAATCCTTCCTATTATGGAATTATACTAAATCGTGTCCATGATTTCATACTACCTTCAAGCACACGGATGATATTGACTTAACGCCACCAGG # Right flank : CGCAATCATCTTGCTCCTATCCTAGTATTTGGTACATAAATTTCTGAACAGTTGTGCCATAATTAATAAAACAAGATAGGAGCATTCCAATGAAACGATATCAAGATGATTTTAAAGCCAGCATTGTGAAGATGCATCGTGAAGAGAAAAGATCTATTCGCTCGCTTTCCGAGGAATACGGTGTTTCTCCAGCCGCAATTCATAACTGGGTTAAAGACGCTAAATCAGTTGAGTTAGAAGACGGTACTGAAGTAACGTCCAAAGAATTCAAACAACTTCAAAAGGAAAATCAGCGATTAAAGGAGGAACTTGAAATTTTAAAAGCTGCGGCGGTGTTACTGGGAAAGCATTAGGACGAATTAATTGCCTTGTCTTCATAGAAGATCAGTTATTGCGACACCGCTTATCAATTATTCTTTCGGCACTGAAATTACCGCGCAGCACCTATTACCATTGGAAAAGATATCAACCTAGTCAACACGAACGTGTTGATAATCAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 3125-4612 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWL01000033.1 Pediococcus parvulus strain JCM 5889 sequence33, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3125 36 100.0 30 .................................... CGACAGCAATACTTCAATTGCCTGAAATCA 3191 36 100.0 30 .................................... TTATCTAACTGAACAGATTGGCAAACTGCA 3257 36 100.0 30 .................................... GAAAAAGCTAATCCGATGCTAGCTAAGCCC 3323 36 100.0 30 .................................... TCTGGTAATGTAAGTATCTTACCTTTGTAC 3389 36 100.0 30 .................................... CTGACGTAGAAGAAACAAAGTCTTTGCTTA 3455 36 100.0 30 .................................... TTGATGACATAACAGACCTCGTTATGCGCA 3521 36 100.0 30 .................................... AATTACAGGTTTCCTGCAAGCATATCAGGC 3587 36 100.0 30 .................................... ACGCTGTACTATCGTATTGATGCCAACGTT 3653 36 100.0 30 .................................... ATATTTGGGGAGATGATGCTCCGCTACGCT 3719 36 100.0 30 .................................... GAAGCGGGAGCTGGTGTTCTCGGTACGTCA 3785 36 100.0 30 .................................... TTGAGCATTATTTGGCCACTCCGATAGGCG 3851 36 100.0 30 .................................... GAATTATTTTCCAAATCTGGTGCAACCTGG 3917 36 100.0 30 .................................... ACATCGAAACATATTAAGCTCCACGCTGTA 3983 36 100.0 30 .................................... TTAGCTGAAATCAAGAAACAAGTGAATGTT 4049 36 100.0 30 .................................... TCACCTCCTTCTGTAACGTCCGTAGTATCC 4115 36 100.0 30 .................................... TCGTCAATTGGTGGAAAAATTTCATCTGAA 4181 36 100.0 30 .................................... GCAGACGGCTGAATGTCCAAACGTGAACTA 4247 36 100.0 30 .................................... TTTACTGAAACAGAAGCAACACAATCTAAG 4313 36 100.0 30 .................................... TACGTTATCATTCAGTTGAGCTGGTTGACG 4379 36 100.0 30 .................................... TTCCAGTGAGTGAAATCATTTCCAAATTCT 4445 36 100.0 30 .................................... TACGTTATCATTCAGTTGAGCTGGTTGACG 4511 36 100.0 30 .................................... GTGTTGAATGATTCACTCTGATCGTCCAAT 4577 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : CCAGCCCAATGCAAGGATATGGCGTGCTGACATTACTTATTTGGAATTACGTCCAGGAACCTGGGTTTATCTCAGTTCTATTTACGAACCAAAGGTTCATCAAGTTCTTGCTTTCAAGATTGGTCGTCAGATGGAGGCGACGTTAGTTGTAGAAACGATTAATCAGGCGCTTGAATGTCATCAAAAGCCACAATATTTTCACTCTGACATGGGTTCACAGTACACCAGCAACGAAGTTGAAACTTTACTTGAACGGCATCAGATTAGCCACTCATATTCAAAACAAGGTTATCCTTATGATAATGGGCCAATTGAAGCTTTTCACTCATTGTTGAAGAGAGAGTTTGCCTTTCAAACAACTTTTTCCAATTTTGAGGACTTGGTAATCCGAACCTCAAATTATATCAGTTGGTTTAATTCCGACAGAATTAGAACGAGTGTTTAGAAAAAGATGTGCCATTTATTGACATAGGAGCATCTTGTCTGTTAGATGAATGCTT # Right flank : CAAAGGAAGCAACTATTACTATTAATGAATACTTGTTTTACAAGTGACTAATAAAAGGAGGGAAAGAGCTATGAGTAAAAAAATTAAATGGTTAGCCGTAATTACAATACTGGTGTCTATCGTCTCCTTAATTTTGAACGTTTCAGGAAACTCAAACAGTGGTTTGCAAGTGTTGTCAAACATATTGACTGTAGTGCTTGCAGGACTTTTATTGTCGAATCGATCTAGATAAGAGATTTATGAACTTTTAATTGTGCAAAAAACGTATTCTTAAGAGTGCCAAAATCAATATATGAAAAGAGCGCCCTTATATTTGAAGGGCGCTTTTCATTATGGTCACTTTATTTTTCCATCGCCGGCAAAAGCAACGTAAACGTATCGGCATCTTTCACAAAATTGTTCACAATCTCTACGTTGTAGTTACCACCAATTCCATATTTAGCGGATTGCGACAGTTCGCCATAAGCAGCACCGATGAATTGATCAATCTGGGGACGGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 126-1678 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWL01000055.1 Pediococcus parvulus strain JCM 5889 sequence55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 126 36 100.0 30 .................................... CAGCGGCTTTATACGGATTGACAATAACGG 192 36 100.0 30 .................................... ACAAAGCGGCATTTTAGGGGTTATGTTTGA 258 36 100.0 30 .................................... CCAAATAAGCGGCGTAAACTTAATTCCAAA 324 36 100.0 30 .................................... TGATGTATCCACGAGTCAAATTCATTTCTC 390 36 100.0 30 .................................... GCCGATCGACAGTATCTTTATATGTCGTAA 456 36 100.0 30 .................................... CATGCGGATCAGCTGTGTTGAATGATTCAC 522 36 100.0 30 .................................... CTTGTCCTAAAGCATTAGCCGCCTGACCTT 588 36 100.0 30 .................................... CTTGGGAGCCGACGAACTTGCAAAAATAGC 654 36 100.0 30 .................................... TTGACTATCTGGAGAAATATGTGTTAAGCA 720 36 100.0 30 .................................... CCCTTATTATACTGGGCTTTATCACTCTTT 786 36 100.0 30 .................................... CGATCAAATGAACAATACTTCTGCTAACAA 852 36 100.0 30 .................................... ACAACTTACGCAAATTCTTATATCGTGCAA 918 36 100.0 30 .................................... TTCCTCCGCTTCTTTTCACGACGCTTCTTA 984 36 100.0 30 .................................... TAATCAACCATTTAACAGACGGCCCCTTGA 1050 36 100.0 30 .................................... CTTATCCATCTTGGTCTGCAAGTCTTCCAT 1116 36 100.0 30 .................................... CAGACGGATCGACTATGACCATCGCCGAAT 1182 36 100.0 30 .................................... GACTACGTTTGCCATTAGCTACCACCTCCA 1248 36 100.0 30 .................................... ACAGGCGTGTCTTGGCTTGCGCTTGTAAGT 1314 36 100.0 30 .................................... ACATCATCGGCAAACTTGCTGATAAGAACG 1380 36 100.0 30 .................................... AGTTTTTTGCTGTATACATAAAATTTATTT 1446 36 100.0 30 .................................... TTTAGTTGTTCGATTTCTTTATCAGTGAAT 1512 36 100.0 30 .................................... ATGACTATTTACACGGCAAGGACAGTATTC 1578 36 97.2 30 ...............A.................... CTTAAACCGGCCGTTAGCGATCATTTTTTT 1644 35 88.9 0 .............................-.G..GG | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.4 30 GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : CATTGAGAGCTTTTATAACAGTGCTCGAATTCACAGTAGCATTGATTATTTAACTCCAAATGAAAAGGAAAAATTAGTCGCTTAAATTATACATAAAATGTGTCCAGATTCTTGACCTAAATCCAG # Right flank : TAGTATGAAATCATGGACACGATTTAGTATAATTCCATAATAGGAAGGATTGTGTTTTTATGACCAATAAAAAGTACTCAGTAGATTTTAGAAAAATGATTGTCAAGCTGTACCAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //