Array 1 19265-21392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGYZ010000067.1 Pseudomonas aeruginosa strain 2696_S6 2696-S6-MH-C67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19265 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 19325 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 19385 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 19445 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 19505 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 19565 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 19625 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 19685 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 19745 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 19805 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 19865 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 19925 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 19985 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 20045 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 20105 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 20165 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 20225 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 20285 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 20345 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 20405 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 20465 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 20525 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 20585 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 20645 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 20705 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 20765 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 20825 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 20885 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 20945 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 21005 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 21065 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 21125 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 21185 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 21245 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 21305 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 21365 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30965-29917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGYZ010000067.1 Pseudomonas aeruginosa strain 2696_S6 2696-S6-MH-C67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30964 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 30904 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 30844 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 30784 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 30724 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 30664 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 30604 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 30544 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 30484 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 30424 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 30364 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 30304 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 30244 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 30184 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 30124 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 30064 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 30004 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 29944 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //