Array 1 1317945-1316523 **** Predicted by CRISPRDetect 2.4 *** >NC_018089.1 Streptococcus mutans GS-5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1317944 36 100.0 29 .................................... GGTCCGCCTGTATAAACTGCAACAGTACC 1317879 36 100.0 30 .................................... AACGAAAACCAATTCAACGCCCCTCGCGGT 1317813 36 100.0 30 .................................... TAATAGCAATCGTGACGGACGTATTGATTT 1317747 36 100.0 30 .................................... TTTTATCAAAGATTTCGTTTTTGTGCTGTT 1317681 36 100.0 30 .................................... GTTGAGTGCAACAGCTAGCTAATAGCTTTT 1317615 36 100.0 30 .................................... TACGCCCTAAATACGACAGGTCAGGACGAT 1317549 36 100.0 31 .................................... CAATCAAGCTGCACGCTCGCCAATAGAGACT 1317482 36 100.0 30 .................................... ATGGACGGCGCTTGAATGGCTACATAATGA 1317416 36 100.0 30 .................................... TATCAAGGCAGGAACAAAATACAGACCTAA 1317350 36 100.0 30 .................................... GAGGCGCGTGTACGGCAAGAAGAGCTGAGA 1317284 36 100.0 30 .................................... CTTTTGATGGTAAGCAGGTCATGAGAATGA 1317218 36 100.0 30 .................................... AAAATATATTATTGATTTGCCAGAACCTAT 1317152 36 100.0 30 .................................... AGTGATTATGATGGAACTTACTTTTAAGGT 1317086 36 100.0 30 .................................... CTCTGGCTCTAATGCTTATCTAGAGGATAC 1317020 36 100.0 30 .................................... CCGTCGCCTTTTGCGATAGTTAGTCCATCT 1316954 36 100.0 30 .................................... AGGCATTTTCTGATTGAGATTTTCGATATT 1316888 36 100.0 30 .................................... ATTTCTGCTAACGCTTATCACTTGTTTTAC 1316822 36 100.0 30 .................................... TATAGCTAATATGTGTATACTGACAGCGCA 1316756 36 100.0 30 .................................... TAAAAAGACTACACAAGAATTAATTGATAT 1316690 36 100.0 30 .................................... AAGCAGGTTCTAGTGTAGCTATGGGCGCTA 1316624 36 100.0 30 .................................... GTCACGAGCTACTCTGTCTAAATAGTTTGG 1316558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTGTTGGCATCTTATCTTGATGAAGGGTTGGTTCTACCCATTTCAAGCGATATTCAGAAAATATCTGTTGAAGATGGTTTTGCGACCATGATTCAAGCTGATCCTAGTCCTTATCTCAAAAATAACAAAGCTATTCGGAAAAATGTTACCGTGCCTGAGTGGTTGATACGATTAGCAGACCGTGACCGAGTAAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAACCTTTTAAAAAAGAATCATTTTGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATGTCGAGACAAAAATTGGTCCACGAG # Right flank : ATGTGAAAAGAAAGTAACTACTACATTTGAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1420641-1419393 **** Predicted by CRISPRDetect 2.4 *** >NC_018089.1 Streptococcus mutans GS-5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1420640 28 96.4 33 ...........................T CTGATTAAGCAAATCAGTGATAAACGATTAGAA 1420579 28 96.4 33 ...........................T CTGCCACCACCTAGCCCCGTCAATGCTTGGAAA 1420518 28 100.0 33 ............................ TACATGTATAGTCTTAGTCACTACATCAGATTG 1420457 28 100.0 33 ............................ CTACACTGTATGTCCTCGCTGTCACGCAGAACA 1420396 28 100.0 33 ............................ TTCTTAGCTTCGTCAAAGCTTGCGGACATATTA 1420335 28 100.0 33 ............................ TAACTACAGCAACTGACATTGTTTTGATTGTAG 1420274 28 100.0 33 ............................ TGGTTTTTTTGTTGAATAATCTCGCCTCTTTTA 1420213 28 100.0 33 ............................ TGTCAATCTCATCTACTGCTTCAGGCTTTAATG 1420152 28 100.0 33 ............................ CTTGGTTTTGGCAAAGGCGAAGAAGTCTCTGAG 1420091 28 100.0 33 ............................ TGCAAGCAACGACTTGACAATCACGATATACAA 1420030 28 100.0 33 ............................ TGATATTGACTGTGTCATTTCCAAACTTTCTAA 1419969 28 100.0 33 ............................ TAGACTTAATGCCATCAACTTCAACATCTCTAA 1419908 28 100.0 33 ............................ TACTGATTTGTCAGTTGCAAGGCCTAAATAGCC 1419847 28 100.0 33 ............................ CGACGCGCGTCCTCAAGTTCATCATCTGATTTT 1419786 28 100.0 33 ............................ TGGTTTTTTTGTTGAATAATCTCGCCTCTTTTA 1419725 28 96.4 33 ..........................T. TGGTCGTTAGTGGATAGAATTATAGACCTTATC 1419664 28 100.0 33 ............................ TGGATAATTTATATTTTAAATTATTTATTTCTG 1419603 28 100.0 33 ............................ TGAAAGGTCGTTAAAGTTAAAGCTGATTTGTGG 1419542 28 100.0 33 ............................ ATGTTGATTTTACTTCCATAGCCGTTGCTACTG 1419481 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 1419420 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //