Array 1 1661340-1660364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023197.1 Bifidobacterium breve strain NRBB49 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1661339 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 1661271 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 1661204 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1661138 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1661070 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1661004 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 1660937 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1660871 33 100.0 35 ................................. AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 1660803 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA 1660735 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1660668 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 1660601 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1660533 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1660465 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1660396 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.2 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1671275-1668141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023197.1 Bifidobacterium breve strain NRBB49 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1671274 33 100.0 34 ................................. CCAGAGCGAAGCACGGAAGGGTGCGCCCGCACTG 1671207 33 100.0 35 ................................. ATCACCCCGCCCGCCTCACTGGAATGCATGGAGAA 1671139 33 100.0 34 ................................. CATCGTATCCGGGGAACATCTGGACACCGAGCAT 1671072 33 100.0 35 ................................. CGGAAGAATATCGCTTGACCATCAAGGGCATGTTC 1671004 33 100.0 34 ................................. AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG 1670937 33 100.0 34 ................................. CTCCATTGGGCTGGATGATACATTGCATCATATC 1670870 33 100.0 33 ................................. ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC 1670804 33 100.0 35 ................................. AATTCAGCAACAGTCCCATTAAATCACATTAAAAC 1670736 33 100.0 33 ................................. AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC 1670670 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT 1670603 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1670537 33 100.0 34 ................................. CACGTGAAACAAATCGCAACCGGGGAACGTAAAC 1670470 33 100.0 33 ................................. CTCGTAACACAGGCCGGCTATCAAGGCCGATTG 1670404 33 100.0 35 ................................. CAGCGCTTCGGGCACGACGGATATTGATATGCCCG 1670336 33 100.0 37 ................................. CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA 1670266 33 100.0 35 ................................. ATAAACAATAATATACCCCACGGCAGTAAGCCGTG 1670198 33 100.0 34 ................................. CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG 1670131 33 100.0 34 ................................. TACAATGCCGTGAACAGCCTCTAAAAGCATTAAG 1670064 33 100.0 35 ................................. ATCATAATTATCACTGTTGCGCGGGGCCTCCATGA 1669996 33 100.0 33 ................................. ATACGACCCTTGCCGCCGCGCACCGTAGCCGCT 1669930 33 100.0 35 ................................. GCGTACTCGACGAACTGGTGGCACATGGCCTCGAA 1669862 33 100.0 35 ................................. GCCAACGCCGGCATGATCGGCAGCGACGCGGGCAG 1669794 33 100.0 33 ................................. TTCCACGAGACCGGCCACATGCTCGACTGGATG 1669728 33 100.0 34 ................................. ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA 1669661 33 100.0 35 ................................. TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC 1669593 33 100.0 34 ................................. ATGGGCGGGCTCGCGGCCGATGCGAGGAACGGGC 1669526 33 100.0 34 ................................. GCATCCTCGAACAGCGCCGCCGCATCACCAACCT 1669459 33 100.0 34 ................................. TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA 1669392 33 100.0 35 ................................. CTCATGCGTGGCCTTGTTGTTGAACCACGCCACAA 1669324 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1669256 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1669187 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1669120 33 100.0 33 ................................. TGCATCATAATTGCGGCAACCTGACCGGCAGGG 1669054 33 100.0 33 ................................. TAACCGTGGTGACCTCCGTGATCACGGCGATCA 1668988 33 100.0 36 ................................. CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG 1668919 33 100.0 36 ................................. AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC 1668850 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1668781 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1668713 33 100.0 35 ................................. CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG 1668645 33 100.0 35 ................................. CTTGTACACGGCGCACATCGCCGCGCAGTCGAACG 1668577 33 100.0 35 ................................. CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA 1668509 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1668443 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1668377 33 100.0 34 ................................. ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT 1668310 33 100.0 35 ................................. TGGAAGTGGAGTTCCGGCCTTTCCAGGAACGCTGA 1668242 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1668173 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTATAGCGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCCTGGGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCCCGTCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCACTGTGGATGATCGGCTTCTCTCCGTCCTTGAGCGTGGAGCAGGCGTCGGTGAGCATGCCGTTGGCCAGCTCGGCGTTCGGGCTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //