Array 1 1457589-1457207 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397173.1 Streptococcus gallolyticus subsp. gallolyticus TX20005 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1457588 36 100.0 30 .................................... TCACAAGGGAAGATAACTCCAGACCAAAAA 1457522 36 100.0 30 .................................... TCACAAGGGAAGATAACTCCAGACCAAAAA 1457456 36 100.0 30 .................................... TGAATCTGCTAGAACACCATTGTCTCTAGA 1457390 36 97.2 30 .................................A.. ATTAAAGTGTGACAAATAGTCATAGTAAGT 1457324 36 97.2 46 .................................A.. CGAATGGTTCCAAAACCTGCCATTAAAATAACACCGCTAAGAAGCA 1457242 36 94.4 0 ..............T..................A.. | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 98.1 33 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAGAC # Left flank : TGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGTGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TCTAACATTAATCATTGTCATTCGAGTTGAGTTTTAGCGCTGTGCTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTTCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAGAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1459787-1458232 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397173.1 Streptococcus gallolyticus subsp. gallolyticus TX20005 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1459786 36 100.0 30 .................................... AAACATTTTACGTCGATATTATGGAAAATT 1459720 36 100.0 30 .................................... ATCCAGTGGTGGAGGTGGTACTGGACAAGT 1459654 36 100.0 30 .................................... CGGTGATGTGCTATTATCTGTCGTTAACGT 1459588 36 100.0 30 .................................... AAATAACGTTTCTGTTAAAGCATATATTCA 1459522 36 100.0 30 .................................... CGTGCCAATTTCCAAAACGTTGCATTTTAA 1459456 36 100.0 30 .................................... CAATTCAGTAAAAGATAAGATGGAAGGGCT 1459390 36 100.0 30 .................................... AAGACACGTTGTTCACAGACATGCAAAATA 1459324 36 100.0 30 .................................... AAGTCAATGATTTCAAAGTCGTTAGTGAGT 1459258 36 100.0 30 .................................... GATTATTGATGTTATAATGACGTATACACA 1459192 36 100.0 31 .................................... CTAGTAAAGTTGCTCTTCTTGATAATATTCA 1459125 36 100.0 30 .................................... TACGAATTTCGAATATAATCATTCACTTCT 1459059 36 100.0 30 .................................... TCCGACATTTTACCTTACAAGACAAAATGA 1458993 36 100.0 30 .................................... TGCTGACATATTTTCCCAATTGCTAGGAAT 1458927 36 100.0 30 .................................... GATTTTCTTTGCGTATATGTATTTCGCACG 1458861 36 100.0 30 .................................... ATAATGACAAATCAAAAGATAATTCAGTAT 1458795 36 100.0 30 .................................... ATTGTTTGACCCATGAATTCTAACATCAAT 1458729 36 100.0 30 .................................... TCATCTCCAAAACGTTTGAAATAATCAAAA 1458663 36 100.0 30 .................................... TGACGCAGGTGTTAAACTATTGCAAACTTT 1458597 36 100.0 30 .................................... TCCTAAAAATAAATTTGACGAATTGCTATC 1458531 36 100.0 30 .................................... ACTATCACTTCTCTTTAAAAATGAATAACA 1458465 36 100.0 30 .................................... CTAAACCATAATTAAAAATTGTGTCGTCTT 1458399 36 100.0 30 .................................... TTTTACAAATAACCCAAGACATCTATAACG 1458333 36 100.0 30 .................................... ACAATCGAGTGTATTTACGAAGCTTGGTTC 1458267 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGCTTTTGAGGTATAATATAGTTAAAAATAATGAACCGTTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTTATCAGAAATAGAATGCCATGAAACTTATTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAGACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //