Array 1 337614-336386 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDT01000006.1 Pseudomonas aeruginosa strain WCHPA075025 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 337613 28 100.0 32 ............................ TTCCGCGAGAGCTACGGCCGCAGAACCCGCGA 337553 28 100.0 32 ............................ GCGTCCGGTCGGGCGGGGTCCAGCCCGGTGGC 337493 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 337433 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 337373 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 337313 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 337253 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 337193 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 337133 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 337073 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 337013 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 336953 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 336893 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 336833 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 336773 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 336713 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 336653 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 336593 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 336533 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 336473 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 336413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38001-38927 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDT01000028.1 Pseudomonas aeruginosa strain WCHPA075025 28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38001 28 100.0 32 ............................ GCCAGCGCAGACCCGAGCAAGGCCGCTGTGGC 38061 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 38121 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 38181 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 38241 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38301 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 38361 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38421 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38481 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38541 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38601 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 38661 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 38722 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 38782 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38841 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 38900 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47764-47456 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDT01000028.1 Pseudomonas aeruginosa strain WCHPA075025 28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47763 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 47703 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 47643 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 47583 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [47558] Deletion [47548] 47543 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 47483 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 27 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.49, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //