Array 1 257633-258881 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHO01000014.1 Escherichia coli strain 650 BN4_650_1_(paired)_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257633 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 257694 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 257755 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 257816 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 257877 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 257938 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 257999 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 258060 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 258121 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 258182 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 258243 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 258304 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 258365 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 258426 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 258487 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 258548 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 258609 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 258670 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 258731 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 258792 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 258853 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284581-286439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHO01000014.1 Escherichia coli strain 650 BN4_650_1_(paired)_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284581 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 284642 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 284703 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 284764 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 284825 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 284886 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 284947 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 285008 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 285069 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 285130 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 285191 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 285252 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 285313 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 285374 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 285435 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 285496 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 285557 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 285618 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 285679 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 285740 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 285801 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 285862 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 285923 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 285984 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 286045 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 286106 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 286167 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 286228 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 286289 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 286350 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 286411 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //