Array 1 227321-228004 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPK01000006.1 Capnocytophaga stomatis strain 11022B-2 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 227321 36 100.0 30 .................................... GCTTGGTGTAAACCATACACAAATGACCCT 227387 36 100.0 30 .................................... GTTAGCTTCTGTAGAAGCACAGATTAGAAA 227453 36 69.4 84 ...................TGCT.T...T.CATG.G TTCCTTTGAAAAACAAATAAAAAACTCACGAATAAAATGAGAGCAGTTCCAACTGGTGTTAGGCGAAGAATATTCAACCATTAT 227573 36 100.0 30 .................................... TTGATGGAATCACGCTCGGCTGATGCTGCC 227639 36 100.0 30 .................................... GAAGAAGTTTCAAGCCAATATTTCCTATCG 227705 36 100.0 31 .................................... TATTGTAAAAAAGAATAAAATGACAGCAAAA 227772 36 97.2 30 ..................C................. GCTCAATCTCTTGGAGCGCTCCTGTAGAGA 227838 36 100.0 29 .................................... GGTAACATACAAATAACGGAAATAGGTAA 227903 36 100.0 30 .................................... TTAGAACAACTAGTAATTTCATCGGATGTC 227969 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 10 36 96.7 36 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : ATAGATATCAGCGGTTCGAATCCCTCTCTCTCCGCAGTAAAGGGTGTAAATCAAGTAGTTACGAGATTTACACCCTTTTTTACACCCAAAAATATCGAATGATTTTTATTCCTTCCTCACATTCTTCATATTTTTTCCCAGATTTATGGTTTTAAATTTTCAGATTGGCTCAGAACTAAGCTTTTGAGTTGGAAACCTCAATTCACACTTCACACAAAACACTAAAAATCAAATAATTAAAAATAAAATTCTTATTAATTTCCGCACGTGTTGTCCCAATAATATAAATTCAAAAACATAATTTGTAACACTTTTCACACAAAAACAGAAAAATAAAAACCTCCCGATGAAGTACATCGGGAGGTTTTGCGTTAAATAAAATGTTGTGATTACCCTTCAAATGCTTGCATTCATAAGTTCCTTTGAAAAAACAAATAAAATTTCACGAATAAAATGAGAGCAGTTCCAACACAGAGGTAACCTTGTAACCTTGACCACTT # Right flank : CTGTCTTGACCTTTATTAATTACACCCGTGTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGAGCAGTTCCAACAAGAAGCCCTTAACAAGTTATTAGGGATAAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACCCTCTACAAAAAGAAGAGTTGTCAGCGGAAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTTTCTTGATGAAAAGGGGCTTGTTATATTAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAAATGATTAGGTATGTTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 228318-229210 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPK01000006.1 Capnocytophaga stomatis strain 11022B-2 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 228318 36 100.0 30 .................................... CCTCTACAAAAAGAAGAGTTGTCAGCGGAA 228384 36 100.0 30 .................................... TTTCTTGATGAAAAGGGGCTTGTTATATTA 228450 36 100.0 30 .................................... AAATGATTAGGTATGTTAACGAAGAGGTTA 228516 36 100.0 30 .................................... TGCTGAAAATTAGGCGATAGCAAATATTCC 228582 36 100.0 30 .................................... GGGTAAATCCACCACATCAAATTCTTTCCC 228648 36 100.0 30 .................................... AAAACCTAAAACATTCATACTTACCTTTCC 228714 36 100.0 30 .................................... AGAACAGGAATACTTGTATCTTCTTGCTCG 228780 36 100.0 30 .................................... CCTCTACAAAAAGAAGAGTTGTCAGCGGAA 228846 36 100.0 29 .................................... CTACTCCACTTCGGGCGATGAATTCCGCA 228911 36 100.0 30 .................................... AAGACAATTGTTTTTGCAATTCTCTTTGCT 228977 36 97.2 30 ..........T......................... TTTTGGCGGTTATTATGACCATATTTTATA 229043 36 100.0 30 .................................... TCCGCTACTTTGCGTGTAATTTCCGCAGTT 229109 36 100.0 30 .................................... GTAGGAAAAATAAGCCCTGATGCTCGTCCT 229175 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TTGGAGCGCTCCTGTAGAGAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACGGTAACATACAAATAACGGAAATAGGTAAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTTAGAACAACTAGTAATTTCATCGGATGTCGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTGTCTTGACCTTTATTAATTACACCCGTGTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGAGCAGTTCCAACAAGAAGCCCTTAACAAGTTATTAGGGATAA # Right flank : CATCTCCTTCGCCTTTAGCATTTTCAATTTTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAGCAGTTCCAACGTGACGGTTATTGTGGTAGCTTGATTTACAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACATATTCAGGTATGGTTAAGCAGTTTTATGTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAAAATGAGTTTTATGCTGAATTAGGACATTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAGAGGTATTCCGATGTATTATATCGACAAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACGAATGCAGTTTCAGGGGGAATAGCTTCCCTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 229409-229773 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPK01000006.1 Capnocytophaga stomatis strain 11022B-2 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 229409 36 100.0 30 .................................... ATATTCAGGTATGGTTAAGCAGTTTTATGT 229475 36 100.0 30 .................................... AAAATGAGTTTTATGCTGAATTAGGACATT 229541 36 100.0 29 .................................... AGAGGTATTCCGATGTATTATATCGACAA 229606 36 100.0 30 .................................... GAATGCAGTTTCAGGGGGAATAGCTTCCCT 229672 36 100.0 30 .................................... GGGTTTGGTGAACATATCTACCTGACCTCC 229738 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : CAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACAAGACAATTGTTTTTGCAATTCTCTTTGCTGTTGTGATTATCCTCCAAAATGAGAGCAGTTCCAACTTTTGGCGGTTATTATGACCATATTTTATAGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACTCCGCTACTTTGCGTGTAATTTCCGCAGTTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACGTAGGAAAAATAAGCCCTGATGCTCGTCCTGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAACATCTCCTTCGCCTTTAGCATTTTCAATTTTGTTGTGATTACCCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAGCAGTTCCAACGTGACGGTTATTGTGGTAGCTTGATTTACA # Right flank : CCTCAATGCTAAAAAATGAGTGTATAAAACTGTCTTTCAGGAGTGTAATATCTTATATTTTACTTCATCAGTGCTTCTTTTTCCTTTTTAAATACCTCAGCAAAATACTCGGCATAGGTTTTTTCTTTTTCTATTTTGCCGTATTTTTCTTGACAATAGTCCCAAAATTCTTTTTTAGGTAATTGATTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAGGCTTTTTGTTCTAAATCGGTTGCTTCTTGTTTTAGTTGGGTGATGTTCACTTTTTCTGGATTAGTATTTAACTCAAATACCTTGTAATTCTCCACATTTTCATTTTTAAGTTGCTTTAAAAGTCCGTTGAGAATATAGTACTTGAAATTTTGATTACCCTCTTTTTTTAATATTTCCTTATCTTTCACCTTTTCCAAAATATACTCCTCTATAAGGTGGACTTCCTTCAGCAGTTCTTCCCTTCTTACTTTTTCATATTGTTCTATTTCTCTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 61850-64051 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPK01000009.1 Capnocytophaga stomatis strain 11022B-2 sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 61850 47 95.7 30 .........C...A................................. TAAAACTGCAAACCAAGCGGAGTTGGTACA 61927 47 95.7 30 .........C...A................................. GTTCTAAGGAAAGATTTTCTTTATTGATAA 62004 47 95.7 30 .........C...A................................. CGTTCATGATGAAGTTCAGGCAGCGAAAAA 62081 47 95.7 30 .........C...A................................. CAAGAGACCATCAGGGTGTTAGGATCAGCA 62158 47 100.0 30 ............................................... ACAAATTCTGCTACAATATGAGTAACATAA 62235 47 100.0 30 ............................................... AAGCCATTTTAGGTTGAAAATATAGCCATT 62312 47 100.0 30 ............................................... GAATACGGAGACGAACCTGAATACGTCAAG 62389 47 100.0 30 ............................................... TTTTATCTTTTAATTCCTGATAAAGTTTGA 62466 47 100.0 30 ............................................... CATAATTCGTAAAATTAAAAAAATCCGAAA 62543 47 100.0 30 ............................................... CACATCACTGGATATTTTAACCTATACCGC 62620 47 100.0 30 ............................................... TCATTTCGGCTTCATCTCTTCTCAGTTGTT 62697 47 100.0 30 ............................................... CTTATCCCCCACGAAAAGAAAACCATTTTA 62774 47 100.0 30 ............................................... AAATTGTATTGTGTCATCTTCTTTATATTT 62851 47 100.0 30 ............................................... TATTGAAGCATTTCAGTAAAACCTTTCCTA 62928 47 100.0 30 ............................................... GGCAAGGTGATTTGTCCACGTTCGGCTACG 63005 47 100.0 30 ............................................... TTCTTGCCCGTTGTGCCCTCATTTGCATTT 63082 47 100.0 30 ............................................... CTTGTGTATTCATTGTTATTAGCTTTACTA 63159 47 100.0 30 ............................................... TAAGTTCTCTTACTTTTGAATACAATTCCG 63236 47 100.0 30 ............................................... CGGCTTTTATTTTTTCTTCATCACGTCTTT 63313 47 100.0 30 ............................................... AGTATTTTGCACCTCGTTGAATGGCTTGAT 63390 47 100.0 30 ............................................... TCCAAAGCCATACGATTATAATTGTTAGCA 63467 47 100.0 30 ............................................... AGTGGTACAGATGAAGAAGTTATATATAAC 63544 47 100.0 30 ............................................... GGGTTTCGGGGCGAATGCCAAGCTGGGCGG 63621 47 100.0 30 ............................................... CACAAGATTATCTTATCAAACAAATATTAG 63698 47 100.0 30 ............................................... CCAAGTGAGCCAGTTCCTGAGCTGACGGAC 63775 47 100.0 30 ............................................... TTAAGTTAATAAAATCGATTTAAGACTATT 63852 47 100.0 30 ............................................... TATCCTTCCTACCACATTTTCTCCATCTTA 63929 47 100.0 30 ............................................... TGAAGAATTTTTAGTAATTGAAAAAGATTT 64006 46 89.4 0 .....................................-C.CT....T | ========== ====== ====== ====== =============================================== ============================== ================== 29 47 99.0 30 GTTGTAACTAATCGCAAAGTTACGAAAATTTGAAAGCTTGTCACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGACTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTAAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTTCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGTCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGTTTGTCAGAGGATTATTTTTTGAG # Right flank : TAATTTTTGTCAATCTACAAATACTTTATATCTTCGCGTAGTTTTGGTGGGGAATTTGTATTTTCGTTAAAAATAATCGGAAAGGCACAAATTTAAAAAATGTAGAAAAATGTATTCAACAACTAAGGCAATTGTAATTTCAGCTTTGAAATATGGAGATAATAGCTTGATAGTTAAATGTTTTACCGAAGATTTGGGTGTTCGTTCGTACTTGCTTCAAGGCGTTTTATCCTCAAAAAAAACAACATTAAAACCAGCTCTTTTTCAGCCTTTTATGCAACTGGAATTGGTGGTAAGTAACAGAAACACAGCCTCTTTGGAACGCATCAAGGAAGCAAAAGTAACCAAAGTTTATCAGTCCATACACACAGATATTTACAAAAGTTCCGTAACAATGCTCTTAGCCGAAATTTGTTCTTTTGCCTGTGCTAATGAGTATGCAGAACCTGATTTGTATCAATTTTTAGAGGAAAAATTATGTTTTTTTGATGAAAATGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCGCAAAGTTACGAAAATTTGAAAGCTTGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //