Array 1 162915-161969 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIV01000007.1 Salmonella enterica strain BCW_5845 NODE_7_length_225968_cov_4.50776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162914 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162853 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162792 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162731 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162670 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162609 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162547 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162486 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162425 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162364 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162303 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162242 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162181 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162120 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162059 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161998 29 96.6 0 A............................ | A [161971] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTATCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181090-179048 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIV01000007.1 Salmonella enterica strain BCW_5845 NODE_7_length_225968_cov_4.50776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181089 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181028 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180967 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180906 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180845 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 180784 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 180723 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 180662 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180601 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180540 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180479 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180418 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180357 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180296 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180235 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180174 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180113 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180052 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179991 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179930 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179869 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179808 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179747 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179686 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179625 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179563 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179502 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179441 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179380 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179319 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179258 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179197 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179136 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179075 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATTTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //