Array 1 9212-7232 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVX01000057.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5675 NODE_57_length_14816_cov_55.023691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9211 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 9150 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 9089 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 9028 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 8967 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 8906 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 8845 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 8784 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 8723 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 8662 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 8601 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 8540 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 8479 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 8418 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 8357 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 8296 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 8235 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 8174 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 8113 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 8052 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7991 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 7930 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 7869 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 7808 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 7747 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 7686 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 7625 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 7564 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7503 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7442 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7381 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7320 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7259 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9300-11159 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVX01000020.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5675 NODE_20_length_76281_cov_50.067245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9300 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 9361 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 9422 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 9483 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 9544 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 9605 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 9666 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 9727 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 9788 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 9849 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 9910 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 9971 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 10032 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 10093 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 10154 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 10215 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 10276 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 10337 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 10398 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 10459 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 10520 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 10581 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 10642 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 10703 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 10764 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 10825 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 10886 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 10947 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 11008 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 11069 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 11130 29 96.6 0 ............T................ | A [11157] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //